Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_C02.2
         (1235 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    27   4.1  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    27   4.1  
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo...    27   5.4  

>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 425 YDSARSSPARVCHATVTYFNVNDSEDSSSVRTEYTLLDDADRDLE 559
           +D   S+ A   H+T T  + + S  +   R E+T  DD D DLE
Sbjct: 547 FDPTHSADASTTHSTATGLSRSGSLKNIKFRYEFTESDDED-DLE 590


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 1/100 (1%)
 Frame = +2

Query: 221 PSLVRSPSYNGTV-DARSEIDVHKFCGCRTSLPPLTNETXXXXXXXXXXXXXXXXXXXXR 397
           PS VRS SYN T  +++SEI  H+         P T++                     R
Sbjct: 617 PSSVRSSSYNSTASESKSEITSHQNLHTIPINKPFTSDRPLYSSPNDTLERVETGNQGQR 676

Query: 398 TNESRTDSAYDSARSSPARVCHATVTYFNVNDSEDSSSVR 517
            N     S++                  N N+ +DSSSVR
Sbjct: 677 MNSIGNASSFSKRDIMENENGSFDTNAKNGNNVDDSSSVR 716


>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = +2

Query: 401 NESRTDSAYDSARSSPARVCHATVTYFNVNDSEDSSSVRTEYTLLDDADRDLEQD 565
           +E  T S   S  S P    +   T+ N + S+   S R +    DDAD D EQD
Sbjct: 213 DELSTTSPESSKVSEPIIQDNTQTTHINNDSSDIRFSSRCDL-FADDADSDWEQD 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,143,101
Number of Sequences: 5004
Number of extensions: 47367
Number of successful extensions: 121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 671365334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)