Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_C02.2
         (1235 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0172 - 2486102-2486860                                           34   0.20 
02_02_0032 - 6227556-6227926,6228322-6231085                           31   2.5  
02_02_0030 - 6207784-6208154,6208286-6211310                           31   2.5  
02_02_0034 - 6246183-6246553,6246672-6249699                           30   3.3  
02_01_0061 + 442288-442411,442445-445498,445630-446000                 29   5.7  

>09_01_0172 - 2486102-2486860
          Length = 252

 Score = 34.3 bits (75), Expect = 0.20
 Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
 Frame = +2

Query: 413 TDSAYDSARSSPARVCHATVTYFNVNDSED-----SSSVRTEYTLLDDADRDLEQDESTQ 577
           T  A +++ ++P  V  AT+  F  + +       S S++T     D    +++ DE+ Q
Sbjct: 42  TRPAVENSLAAPKHVFPATMNSFTPSTTASAIATPSPSIKTNKAEGDMVQVEMKPDETFQ 101

Query: 578 NIINESLELVSTL*TTCGRISLETLCGVASTSVIA 682
            +  + + +++++  TC  I +E+   V  T V+A
Sbjct: 102 ELCAKMIAMLNSMLVTCRDIKVESTASVGITRVVA 136


>02_02_0032 - 6227556-6227926,6228322-6231085
          Length = 1044

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 663  ATPHKVSKDIRPHVVHNVLTSSRLSLMIFCVL 568
            A PH+V++ + P+++HN L      LM  CVL
Sbjct: 969  ALPHRVTEVLDPNMLHNDLDGGNSELMQSCVL 1000


>02_02_0030 - 6207784-6208154,6208286-6211310
          Length = 1131

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -3

Query: 669  VDAT-PHKVSKDIRPHVVHNVLTSSRLSLMIFCVL 568
            VDA  PH+V++ + P+++HN L      LM  CVL
Sbjct: 1053 VDAAFPHRVTEILDPNMLHNDLDGGNSELMQSCVL 1087


>02_02_0034 - 6246183-6246553,6246672-6249699
          Length = 1132

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 663  ATPHKVSKDIRPHVVHNVLTSSRLSLMIFCVL 568
            A PH+V++ + P+++HN L      +M  CVL
Sbjct: 1057 AFPHRVTEILDPNMLHNDLDGGNFEMMQSCVL 1088


>02_01_0061 + 442288-442411,442445-445498,445630-446000
          Length = 1182

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -3

Query: 669  VDAT-PHKVSKDIRPHVVHNVLTSSRLSLMIFCVL 568
            VDA  PH+V++ + P+++HN L      LM  C+L
Sbjct: 1104 VDAAFPHRVTEILDPNMLHNDLDGGNSELMQSCLL 1138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,978,112
Number of Sequences: 37544
Number of extensions: 266724
Number of successful extensions: 625
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3806166204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)