Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_B20.2
         (1248 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...   142   4e-34
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    31   1.7  
U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily ass...    29   6.9  
DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.      29   6.9  
U50312-4|AAA92321.1|  542|Caenorhabditis elegans Temporarily ass...    29   9.1  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score =  142 bits (345), Expect = 4e-34
 Identities = 76/157 (48%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
 Frame = +2

Query: 422 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVICTS 598
           +R  L  GTV I+LAGRH GKRVV +  LP SGLLLVTGP   N  PLRRI Q +VI TS
Sbjct: 67  LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126

Query: 599 TRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKYVPSEQRKTDQKTVD 778
            ++++   K+P+H ND+YF               G +IFA+ K +Y  SEQRK D KTVD
Sbjct: 127 LKVNVSGVKIPEHINDEYFKRKSTAQKT------GKNIFASGKTEYTVSEQRKKDIKTVD 180

Query: 779 EAVIKAIGARPDKKVLRGYLKAAFGLRSSQYPHRLRF 889
             ++ AI   P+ K L GYL   F L  +QYPH+++F
Sbjct: 181 APILAAIKKHPEHKFLFGYLGTRFSLGKNQYPHKMQF 217


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 353 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 487
           FYPT+   +A S G P +       PN ++  V    A RHAG R
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70


>U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 326 protein.
          Length = 560

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
 Frame = +3

Query: 648 ITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLS-----SAKPIRRQSTRL*SKPSEPDP 812
           +  RR  S  N Q  +++  + L +++ +    S     S  P R++  R    PS+  P
Sbjct: 455 VRRRRSPSPDNRQLGSRKQYSPLRRRQSSPMVASPRRRRSPSPERQRKRR---SPSDSPP 511

Query: 813 TRRCSADTSRRPSDSXPANIPI 878
           TRR S    RR     P  +P+
Sbjct: 512 TRRLSTSPIRRRRSPSPNKLPV 533


>DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.
          Length = 560

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
 Frame = +3

Query: 648 ITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLS-----SAKPIRRQSTRL*SKPSEPDP 812
           +  RR  S  N Q  +++  + L +++ +    S     S  P R++  R    PS+  P
Sbjct: 455 VRRRRSPSPDNRQLGSRKQYSPLRRRQSSPMVASPRRRRSPSPERQRKRR---SPSDSPP 511

Query: 813 TRRCSADTSRRPSDSXPANIPI 878
           TRR S    RR     P  +P+
Sbjct: 512 TRRLSTSPIRRRRSPSPNKLPV 533


>U50312-4|AAA92321.1|  542|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 38 protein.
          Length = 542

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 112 GSRLGHRLXLCWSQIQXRVQE 50
           GSR GH + LCW+ +    QE
Sbjct: 379 GSRAGHNIALCWAAMLYHAQE 399


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,418,646
Number of Sequences: 27780
Number of extensions: 429000
Number of successful extensions: 1202
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3464240056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)