Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_B19.2
         (1261 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   5.5  
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom...    27   7.2  

>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = -2

Query: 459 LQQRTPGSSSDRIARAGPSVRCRLTNFRTLHIRXGAGSRATPSHRHSVTSSQRHLASTAX 280
           L   TP +SS  +  + P     + N  T        + +TP  R+SV +S   + S+  
Sbjct: 546 LNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITRYSVLNSSTPITSSTV 605

Query: 279 VGAGTPRAS 253
           + + TP  S
Sbjct: 606 LNSSTPITS 614



 Score = 26.6 bits (56), Expect = 7.2
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = -2

Query: 459  LQQRTPGSSSDRIARAGPSVRCRLTNFRTLHIRXGAGSRATPSHRHSVTSSQRHLASTAX 280
            L   TP +SS  +  + P     + N  T      A + +TP    SV +S   + S+  
Sbjct: 3354 LNSSTPVTSSSVLNSSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTV 3413

Query: 279  VGAGTPRAS 253
            V + TP  S
Sbjct: 3414 VNSSTPITS 3422



 Score = 26.2 bits (55), Expect = 9.5
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = -2

Query: 459  LQQRTPGSSSDRIARAGPSVRCRLTNFRTLHIRXGAGSRATPSHRHSVTSSQRHLASTAX 280
            L   TP +SS  +  + P     + N  T      A + +TP    SV +S   + S+  
Sbjct: 990  LNSSTPITSSSVLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTPITSSTV 1049

Query: 279  VGAGTPRAS 253
            V   TP  S
Sbjct: 1050 VNTSTPITS 1058


>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 420

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
 Frame = -1

Query: 724 DVIQALNQHSDNTTAGERSVRGAERRGQTG-----WKTR--EQHXQSSAQRLGCGHARQL 566
           DVIQ   Q   +   GE+    AE+ G +G     + TR  + H Q S +      AR +
Sbjct: 304 DVIQVSEQLGPDWYMGEKVNSKAEKLGNSGMFPVNYCTRIYDLHVQKSHETRSLERARSI 363

Query: 565 RPIVGRQSRGAXAP 524
           R IV    R   +P
Sbjct: 364 RRIVSDDPRDYCSP 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,975
Number of Sequences: 5004
Number of extensions: 47888
Number of successful extensions: 277
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 683589232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)