Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_B19.2
         (1261 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   1.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   5.6  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   9.8  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 342 ATPSHRHSVTSSQRHLASTAXVGAGTPRA 256
           ATP H HS  ++  H  ST    +  P A
Sbjct: 428 ATPHHHHSHAATPHHQHSTPLAHSSYPAA 456


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -1

Query: 619 QHXQSSAQRLGCGHARQLRPIVGRQSRGAXAPAAVL 512
           +H   S +  G GH  Q   + G     A  P+A+L
Sbjct: 318 EHTPLSVKFPGMGHGLQPPDLAGTSQGSAGLPSAIL 353


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 187 LIGNRSTCVAAAGHQS 234
           L+GN STCV  A ++S
Sbjct: 68  LVGNVSTCVVIARNKS 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,807
Number of Sequences: 438
Number of extensions: 3745
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43102617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)