Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_B18.2
         (1286 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    37   0.007
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    36   0.012
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    33   0.085
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    32   0.20 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.46 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.60 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   1.8  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    28   3.2  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    28   3.2  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   4.2  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   5.6  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 36.7 bits (81), Expect = 0.007
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = +2

Query: 191 PPPXPPXGGXPPPXXPPPXPP 253
           PPP PP  G  PP  PPP PP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29



 Score = 36.3 bits (80), Expect = 0.009
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = +2

Query: 191 PPPXPPXGGXPPPXXPPPXPP 253
           PPP PP G  PP   PPP PP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 32.3 bits (70), Expect = 0.15
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 224 PPXXPPPXPPXPXXGXXGKXXXPPPXG 304
           PP  PPP PP P      +   PPP G
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPG 31



 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +2

Query: 191 PPPXPPXGGXPPPXXPPPXPPXP 259
           PP  PP    PP   PP  PP P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPP 27


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 35.9 bits (79), Expect = 0.012
 Identities = 22/53 (41%), Positives = 24/53 (45%)
 Frame = +2

Query: 191 PPPXPPXGGXPPPXXPPPXPPXPXXGXXGKXXXPPPXGXXXPPPFXIXXGGXK 349
           PPP P  GG PPP      PP P  G  G    PPP     PPP  +  GG +
Sbjct: 752 PPPAPIMGGPPPP------PPPP--GVAGAGPPPPP-----PPPPAVSAGGSR 791



 Score = 34.7 bits (76), Expect = 0.028
 Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
 Frame = +2

Query: 191 PPPXPPXGGXPPPXXPPPXPPXPXXGXXG-KXXXPPPXGXXXP 316
           PPP PP  G      PPP PP P     G +   P P     P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803



 Score = 33.9 bits (74), Expect = 0.049
 Identities = 18/46 (39%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
 Frame = +2

Query: 191 PPPXPPXGGXPPPXXPPPXPPXPXXGXXGKXXXPPPXG--XXXPPP 322
           PPP PP    P P   P   P P     G    PPP G     PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 33.1 bits (72), Expect = 0.085
 Identities = 19/44 (43%), Positives = 19/44 (43%)
 Frame = -3

Query: 321 GGGXXXPKGGGXXXXPXNPXXGXGGXGGGXXGGGXPPXGGXGGG 190
           G G      GG    P     G GG GGG  G G  P GG GGG
Sbjct: 222 GHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGP-GGFGGG 264



 Score = 32.3 bits (70), Expect = 0.15
 Identities = 20/45 (44%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -3

Query: 321 GGGXXXPKGG--GXXXXPXNPXXGXGGXGGGXXGGGXPPXGGXGG 193
           GGG    +GG  G    P     G GG GGG  G G  P GG GG
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGP-GGHGG 270



 Score = 30.3 bits (65), Expect = 0.60
 Identities = 19/44 (43%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = -3

Query: 318 GGXXXPKGGGXXXXPXNPXXGXGGXGG-GXXGGGXPPXGGXGGG 190
           GG     GGG    P  P  G GG GG G  G      GG GGG
Sbjct: 187 GGGFGGFGGGSGGPPPGP-GGFGGFGGFGGEGHHHGGHGGFGGG 229


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.9 bits (69), Expect = 0.20
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = +2

Query: 203 PPXGGXPPPXXPPPXPPXPXXGXXGKXXXPPPXGXXXPPP 322
           PP G        PP PP P     G    PP      PPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364



 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +2

Query: 194 PPXPPXGGXPPPXXPPPXPPXPXXGXXGKXXXPPPXGXXXPPP 322
           PP  P G    P  PP  P  P          P P     PPP
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478



 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/44 (34%), Positives = 15/44 (34%)
 Frame = +2

Query: 191 PPPXPPXGGXPPPXXPPPXPPXPXXGXXGKXXXPPPXGXXXPPP 322
           PP  PP     PP  PP  PP    G       PP      P P
Sbjct: 420 PPSLPPSA---PPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460



 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 194 PPXPPXGGXPPPXXPPPXPPXP 259
           PP PP    PPP  P P P  P
Sbjct: 467 PPLPPAAPAPPP-APAPAPAAP 487


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 14/44 (31%), Positives = 14/44 (31%)
 Frame = +2

Query: 191  PPPXPPXGGXPPPXXPPPXPPXPXXGXXGKXXXPPPXGXXXPPP 322
            PP   P  G PP   P   PP P          PP      P P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222



 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/50 (26%), Positives = 14/50 (28%)
 Frame = +3

Query: 195  PPXPPXGGXPPPXFPPPXPXXPKXGXXXXXTXPPLXGXKXPPPXXXXXGG 344
            PP P     PP   P   P  PK         PP+       P      G
Sbjct: 1032 PPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSG 1081


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.3 bits (65), Expect = 0.60
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +2

Query: 194  PPXPPXGGXPPPXXPPPXPPXPXXGXXGKXXXPPPXGXXXPPP 322
            PP  P    PP    P  PP P          P P G    PP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732



 Score = 29.9 bits (64), Expect = 0.80
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +2

Query: 191  PPPXPPXGGXPPPXXPPPXPPXP 259
            P P PP    PPP   PP P  P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGP 1727



 Score = 28.3 bits (60), Expect = 2.4
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 191  PPPXPPXGGXPPPXXPPPXP 250
            PP  PP    PP   PPP P
Sbjct: 1717 PPSAPPMPAGPPSAPPPPLP 1736



 Score = 26.6 bits (56), Expect = 7.4
 Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 5/40 (12%)
 Frame = +2

Query: 194  PPXPPXGGXPPPXXP-----PPXPPXPXXGXXGKXXXPPP 298
            PP PP    PPP  P     PP  P P          P P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746



 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = +2

Query: 191  PPPXPPXGGXPPPXXPPPXPPXPXXGXXGKXXXPPP 298
            PP        PPP   PP P  P          PPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 15/47 (31%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
 Frame = +2

Query: 191 PPPXPPXGGXPPPXXPPPXPPXPXXGXXGKXXXP---PPXGXXXPPP 322
           P P  P     PP   PP P  P          P   PP     PPP
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174



 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/42 (33%), Positives = 14/42 (33%)
 Frame = +2

Query: 191 PPPXPPXGGXPPPXXPPPXPPXPXXGXXGKXXXPPPXGXXXP 316
           P   PP    PPP  P   PP P          PPP     P
Sbjct: 140 PTSAPPRPSIPPPS-PASAPPIPSKAPPIPSSLPPPAQPAAP 180


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -3

Query: 297 GGGXXXXPXNPXXGXGGXGGGXXGG 223
           GGG       P  G GG GGG  GG
Sbjct: 112 GGGHHGPLHGPHGGFGGRGGGRMGG 136


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
 Frame = -2

Query: 325 KGGGXXXPXRGGXVXFXXXPXXGXXGXGGGXXGG-GXPPXGGXGGG 191
           KG       RGG   F         G GG   GG G    GG GGG
Sbjct: 128 KGARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGG 173



 Score = 27.9 bits (59), Expect = 3.2
 Identities = 16/43 (37%), Positives = 17/43 (39%)
 Frame = -3

Query: 318 GGXXXPKGGGXXXXPXNPXXGXGGXGGGXXGGGXPPXGGXGGG 190
           GG    +GG       N   G GG   G  GGG    GG  GG
Sbjct: 141 GGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGG--SRGGSRGG 181



 Score = 26.6 bits (56), Expect = 7.4
 Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
 Frame = -3

Query: 315 GXXXPKGGGXXXXPXNPXXGX-GGXGGGXXGGGXPPXGGXGGG 190
           G   PKG            G  GG GG   G G    GG GGG
Sbjct: 123 GPKKPKGARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGG 165


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
 Frame = -3

Query: 321 GGGXXXPKGGGXXXXPXNPXXGXGGXGG--GXXGGGXPPXGGXGGG 190
           GGG    +GGG          G GG GG  G  GG     GG  GG
Sbjct: 29  GGGRGGARGGGRG----GARGGRGGRGGARGGRGGSSGGRGGAKGG 70



 Score = 26.2 bits (55), Expect = 9.8
 Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
 Frame = -3

Query: 318 GGXXXPKGG--GXXXXPXNPXXGXGGXGGGXXGGGXPPXGGXGG 193
           GG    +GG  G          G GG  GG  GG     GG GG
Sbjct: 9   GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGG 52


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 191 PPPXPPXGGXPPPXXPPPXPP 253
           PP   P    P P  PPP PP
Sbjct: 224 PPTYTPKQADPLPAPPPPPPP 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,498,831
Number of Sequences: 5004
Number of extensions: 38466
Number of successful extensions: 332
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 701473834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)