Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_B17.2
         (1261 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...   206   4e-54
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...   202   8e-53
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    29   1.0  
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ...    27   4.1  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    27   5.5  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   5.5  

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score =  206 bits (504), Expect = 4e-54
 Identities = 100/184 (54%), Positives = 134/184 (72%)
 Frame = +1

Query: 283 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 462
           + I  ++ + IP+G++V +K+RLVTVKGPRGVLK+N + + ++++      +K   W GS
Sbjct: 3   RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQG-NTIKFIVWHGS 61

Query: 463 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYI 642
           +K  A +RT  S + NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+  
Sbjct: 62  RKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121

Query: 643 RRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSE 822
           R +K  PGVTV  S   KDE+IIEGNSLE+VS SAA I+Q   V+NKDIRKFLDG+YVSE
Sbjct: 122 RVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSE 181

Query: 823 KTTV 834
           +  +
Sbjct: 182 RGNI 185


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score =  202 bits (493), Expect = 8e-53
 Identities = 98/184 (53%), Positives = 132/184 (71%)
 Frame = +1

Query: 283 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 462
           + I  ++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++      +K   W GS
Sbjct: 3   RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQG-NTIKFIVWHGS 61

Query: 463 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYI 642
           +K  A +R+V S + NMI GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+  
Sbjct: 62  RKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121

Query: 643 RRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSE 822
           R +K  PGVTV  S   KDE+I+EGNSLE+VS SAA I+Q   V+NKDIRKFLDG+YVSE
Sbjct: 122 RVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSE 181

Query: 823 KTTV 834
           +  +
Sbjct: 182 RGNI 185


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = +1

Query: 310  KIPDGLTVHVKSRLVTV---KGP-RGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELA 477
            K+PDG+ +   SRL      K P    L   F H +VD+ +    L + E WF       
Sbjct: 1564 KVPDGIFLKT-SRLPIFEANKAPYNAYLLDFFTHGSVDMLIEQNNLKQSEIWFVLNDFSL 1622

Query: 478  AVRTVCSHVENMIKGVT 528
             + T+CS + N++  VT
Sbjct: 1623 VLATICSCLGNLLNLVT 1639


>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/42 (30%), Positives = 27/42 (64%)
 Frame = +1

Query: 724 LEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLDDI 849
           + D+S+SA    + T + N+++ K  +GL+++ +T+  LD I
Sbjct: 78  MSDISNSACRASKITALNNRELYKDDNGLFITVQTS-FLDGI 118


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 864 YLMFLYVI*HNSCFLRYIKTIQELSDILILD 772
           Y  F++ + H S  L Y KT++E++ + I+D
Sbjct: 788 YYEFIHSL-HQSSLLPYFKTLKEIAHLFIID 817


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +1

Query: 679 NSPKQKDELIIEGNSLEDVSSSAALIQQS 765
           +SPK+K +L ++G  L+ +  + +LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,675,637
Number of Sequences: 5004
Number of extensions: 68416
Number of successful extensions: 185
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 683589232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)