Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_B16.2
         (1285 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0462 - 3497340-3497632,3497713-3497772,3497851-3498405,349...    29   7.9  

>07_01_0462 -
           3497340-3497632,3497713-3497772,3497851-3498405,
           3498695-3498874,3499059-3499223,3499315-3499360
          Length = 432

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 442 SKQPL-NLTNEHGLRSL*LNFTKVRGAGRYSSLCFKX*HDGECVSMK 579
           +  PL ++TN +GL      FT  RG GR  SLC    +D EC   K
Sbjct: 14  TSDPLADITNTNGL-----GFTNRRGKGRAKSLCVVRRNDEECHGSK 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,365,191
Number of Sequences: 37544
Number of extensions: 145269
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3992400636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)