Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_B13.2
         (1388 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear t...    44   4e-05
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc...    36   0.010
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch...    29   1.5  
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    27   6.1  
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p...    27   6.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   8.1  

>SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear
           transport factor Nxt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 44.4 bits (100), Expect = 4e-05
 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
 Frame = +1

Query: 289 FXGVXLQGAVKIXXXLNXLPFQKITXIVTAVXSQPM-FXGGVLINVLGSLKCDXAP-PHL 462
           F G  LQG   I   L  LPFQ++   ++ + +QP    G V++ V G L  D       
Sbjct: 38  FEGAQLQGTKAIVEKLVSLPFQRVQHRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQR 97

Query: 463 YMQTFVLKPLGASFYVQHXIFRL 531
           Y Q F L     ++YV + +FRL
Sbjct: 98  YSQVFHLVNNNGNYYVLNDLFRL 120


>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 36.3 bits (80), Expect = 0.010
 Identities = 22/79 (27%), Positives = 35/79 (44%)
 Frame = +1

Query: 310 GAVKIXXXLNXLPFQKITXIVTAVXSQPMFXGGVLINVLGSLKCDXAPPHLYMQTFVLKP 489
           G  +I   +  L FQ    +++ V S     GG++I VLG +         + QTF L  
Sbjct: 61  GQQEIHNKILDLDFQNCKVLISNVDSLASSNGGIVIQVLGEMSNKGKLSRKFAQTFFLAE 120

Query: 490 LGASFYVQHXIFRLGIHDI 546
               ++V + IFR    D+
Sbjct: 121 QPNGYFVLNDIFRFLREDV 139


>SPBC16D10.01c ||SPBC418.03c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +2

Query: 623 RILDIWYTLYFSCIISSKNL 682
           +ILDIWY L ++C + ++NL
Sbjct: 238 QILDIWYLLGWNCYVEAQNL 257


>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 784 FLCNENQILIL-DYPVRSLNRSLS*FHNRLV 695
           F C  +Q+L+  D  V SLN+ ++ FH +L+
Sbjct: 245 FACRSSQLLVSEDNVVSSLNKLINDFHGKLI 275


>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 392

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 832 HFYNLFVYKHVTIYLHFLCNENQILILDYPVRS 734
           H  N+F+Y+H  + + FL  +  +   D P++S
Sbjct: 358 HLENVFLYRHYRVCVGFLNKQIYVFSSDEPLKS 390


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 957  KSVGYLGI*VLSKMVNXCXKLXSFVLINVXXK 1052
            K  GYL   +L+ ++N   K+ +F+L N+  K
Sbjct: 1162 KLTGYLSSELLNNLLNDFDKILNFILYNIESK 1193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,696,615
Number of Sequences: 5004
Number of extensions: 64599
Number of successful extensions: 104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 769037886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)