Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_B13.2
         (1388 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1376 - 26528208-26528279,26529690-26529986                       50   6e-06
01_06_0963 + 33441731-33442096,33442175-33442270                       34   0.30 
02_03_0315 - 17610605-17610855,17611304-17611370,17612876-176129...    29   6.6  

>08_02_1376 - 26528208-26528279,26529690-26529986
          Length = 122

 Score = 49.6 bits (113), Expect = 6e-06
 Identities = 32/83 (38%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
 Frame = +1

Query: 289 FXGVXLQGAVKIXXXLNXLPFQKITXIVTAVXSQPMFX-GGVLINVLGSLKCDXAP-PHL 462
           F G    GA  I   L  LPF +    +  V  QP    GG+L+ V GSL+      P  
Sbjct: 37  FEGQQFLGAAAIAGKLGSLPFAQCHHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLK 96

Query: 463 YMQTFVLKPLGASFYVQHXIFRL 531
           + Q F L P G +FYVQ+ +FRL
Sbjct: 97  FSQMFQLLPAGGNFYVQNDMFRL 119


>01_06_0963 + 33441731-33442096,33442175-33442270
          Length = 153

 Score = 33.9 bits (74), Expect = 0.30
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +1

Query: 289 FXGVXLQGAVKIXXXLNXLPFQKITXIVTAVXSQPM--FXGGVLINVLGSLK 438
           F G  + GA +I   L  LPF++    V  V  QP   F GG+L+ V G+L+
Sbjct: 59  FEGHMVAGAEEIGRKLLGLPFEQCRHAVCTVDCQPTPSFPGGILVFVSGNLQ 110


>02_03_0315 -
           17610605-17610855,17611304-17611370,17612876-17612941,
           17613037-17613158,17613245-17613428,17614262-17614494,
           17614580-17614913,17615043-17615186,17615303-17615344
          Length = 480

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +1

Query: 370 VTAVXSQPMFXGGVLINVLGSLKCDXAPPHLYMQTFVLKPLGASFYVQHXIFR 528
           +  V SQ    GGV + V G L         + Q+F L P    ++V + +FR
Sbjct: 78  IKTVDSQESLGGGVTVLVTGHLTVRDGVCREFSQSFFLAPQEKGYFVLNDMFR 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,792,376
Number of Sequences: 37544
Number of extensions: 409187
Number of successful extensions: 600
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4373994716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)