Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_B12.2
         (1333 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar...    28   3.3  
SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3 |Schizosac...    27   4.4  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    27   5.8  

>SPBC800.06 |brx1||ribosome biogenesis protein
           Brx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -3

Query: 488 ILNFFQTSYQTVGHQYSVMELLQKTNXVPKG 396
           IL+F +T + T  H   V ELLQ+T  +PKG
Sbjct: 148 ILSFDKT-FDTAPHLKVVKELLQQTFGIPKG 177


>SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 283 RPVCNLATSSNLHXLWVCASXNPI 354
           RP  + A SSNLH  WV  S  P+
Sbjct: 168 RPATSNANSSNLHRYWVLRSTLPM 191


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -1

Query: 676 WFWCFISVFSFKCIYC--FLNGFKIDSLYVIIYFVGLIARYTVFTLFR 539
           W +    V  F C+    +L+G+K  S++  I F+GL+A  T++  FR
Sbjct: 24  WPFFLSVVLFFNCLAATLYLHGYKHSSVFFGISFLGLLA--TMYLWFR 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,411,801
Number of Sequences: 5004
Number of extensions: 38885
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 731281504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)