Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_B07.2
         (1285 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   226   6e-60
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   226   6e-60
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    49   2e-06
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    26   9.8  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  226 bits (552), Expect = 6e-60
 Identities = 103/140 (73%), Positives = 121/140 (86%)
 Frame = +2

Query: 92  PGGIXTARQHVNHRREQRWADKEFKXAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPN 271
           P G+  AR+  NHRRE+RWAD  +K   +GT +K++PFGG+SHAKGIV+EK+GVEAKQPN
Sbjct: 4   PAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPN 63

Query: 272 SAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVV 451
           SAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRFKVV
Sbjct: 64  SAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVV 123

Query: 452 KVANVSLLALYKEKKERPRS 511
           KVA V L AL+ EKKE+PR+
Sbjct: 124 KVAGVGLSALFHEKKEKPRA 143


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  226 bits (552), Expect = 6e-60
 Identities = 103/140 (73%), Positives = 121/140 (86%)
 Frame = +2

Query: 92  PGGIXTARQHVNHRREQRWADKEFKXAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPN 271
           P G+  AR+  NHRRE+RWAD  +K   +GT +K++PFGG+SHAKGIV+EK+GVEAKQPN
Sbjct: 4   PAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPN 63

Query: 272 SAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVV 451
           SAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIPGVRFKVV
Sbjct: 64  SAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVV 123

Query: 452 KVANVSLLALYKEKKERPRS 511
           KVA V L AL+ EKKE+PR+
Sbjct: 124 KVAGVGLSALFHEKKEKPRA 143


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 31/82 (37%), Positives = 49/82 (59%)
 Frame = +2

Query: 209 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 388
           G+   +G+      V+ K+PNSA+RK  RV+L   G+ VTA++P  G  ++ +E+  VL+
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLL 103

Query: 389 AGFGRKGHAVGDIPGVRFKVVK 454
            G GR      D PGV++ VV+
Sbjct: 104 RG-GR----AQDCPGVQYHVVR 120


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -2

Query: 390 ATSTSSFSSMWFRQPS---RGTNAVTFFPFLMSCTRTHLRMA 274
           ++S S F S+WFRQ +       AVT+F   MS    HL  A
Sbjct: 154 SSSVSCFFSLWFRQTNIVWMVFIAVTYFASNMSFFNPHLAEA 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,685,504
Number of Sequences: 5004
Number of extensions: 69028
Number of successful extensions: 147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 699486656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)