Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_B07.2
         (1285 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541...   235   7e-62
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347...   233   3e-61
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126...   144   1e-34
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746...    51   2e-06
12_01_0425 + 3347804-3348284,3348544-3348759,3349038-3349588,334...    30   3.4  

>01_06_1253 -
           35753546-35753686,35753759-35753885,35753970-35754125,
           35754761-35754853,35757132-35757265,35757339-35757465,
           35757550-35757705,35758321-35758325
          Length = 312

 Score =  235 bits (574), Expect = 7e-62
 Identities = 111/157 (70%), Positives = 128/157 (81%), Gaps = 3/157 (1%)
 Frame = +2

Query: 50  PP*PIGVVLSKWVNPG---GIXTARQHVNHRREQRWADKEFKXAHMGTKWKANPFGGASH 220
           PP  +G +    VN G   G+   R+   HRR QRWADK +K +H+G +WK  PF G+SH
Sbjct: 157 PPRLLGDLRCPSVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSH 215

Query: 221 AKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFG 400
           AKGIVLEK+G+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFG
Sbjct: 216 AKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFG 275

Query: 401 RKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 511
           RKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 276 RKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 312



 Score =  229 bits (560), Expect = 4e-60
 Identities = 103/136 (75%), Positives = 118/136 (86%)
 Frame = +2

Query: 98  GIXTARQHVNHRREQRWADKEFKXAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSA 277
           G+   R+   HRR QRWADK +K +H+G +WK  PF G+SHAKGIVLEK+G+EAKQPNSA
Sbjct: 6   GMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSA 64

Query: 278 IRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKV 457
           IRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV
Sbjct: 65  IRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKV 124

Query: 458 ANVSLLALYKEKKERP 505
           + VSLLAL+KEKKE+P
Sbjct: 125 SGVSLLALFKEKKEKP 140


>03_06_0466 -
           34134138-34134278,34134355-34134481,34134558-34134713,
           34135831-34135835
          Length = 142

 Score =  233 bits (569), Expect = 3e-61
 Identities = 105/138 (76%), Positives = 120/138 (86%)
 Frame = +2

Query: 98  GIXTARQHVNHRREQRWADKEFKXAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSA 277
           G+   R+   HRR QRWADK +K +H+G +WK  PF G+SHAKGIVLEK+G+EAKQPNSA
Sbjct: 6   GMGAGRKLKTHRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSA 64

Query: 278 IRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKV 457
           IRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV
Sbjct: 65  IRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKV 124

Query: 458 ANVSLLALYKEKKERPRS 511
           + VSLLAL+KEKKE+PRS
Sbjct: 125 SGVSLLALFKEKKEKPRS 142


>10_06_0053 -
           10110617-10111271,10112023-10112417,10112565-10112650,
           10112973-10113021,10114164-10114290,10114372-10114526,
           10114730-10114948
          Length = 561

 Score =  144 bits (349), Expect = 1e-34
 Identities = 64/99 (64%), Positives = 76/99 (76%)
 Frame = +2

Query: 98  GIXTARQHVNHRREQRWADKEFKXAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSA 277
           G+   R+   HRR QRWADK +K +H G +WK  PF G+SHAKGIVLEK+G+EAKQPNSA
Sbjct: 77  GMGAGRKLKTHRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSA 135

Query: 278 IRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAG 394
           I KC RVQL+KNGKK+ AFVP DGCLN I+EN+   V G
Sbjct: 136 ICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174


>05_03_0026 +
           7466017-7466034,7466340-7466405,7466572-7466833,
           7467254-7467294
          Length = 128

 Score = 51.2 bits (117), Expect = 2e-06
 Identities = 22/27 (81%), Positives = 25/27 (92%)
 Frame = +2

Query: 374 DEVLVAGFGRKGHAVGDIPGVRFKVVK 454
           DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67  DEVLISGFGHKGHAVGDIRGVRFEVVK 93


>12_01_0425 +
           3347804-3348284,3348544-3348759,3349038-3349588,
           3349752-3349815,3349915-3349975,3350271-3350409,
           3350561-3350677,3350794-3350971,3351218-3351828
          Length = 805

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = -2

Query: 408 PLRPNPATSTSSFSSMWFRQPSRGTNAVTFFPFLMSCTRTHLRMAELGCLA-STPTFSRT 232
           P    P+T   S S+  F  P   T+A +  PF  + +            A STP F+ +
Sbjct: 277 PFAAKPSTGFGSTSTTLFNSPFNNTSAASSSPFASTTSIPLFTQTSSSLFANSTPGFASS 336

Query: 231 MPF 223
            PF
Sbjct: 337 SPF 339


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,422,003
Number of Sequences: 37544
Number of extensions: 508168
Number of successful extensions: 1124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3992400636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)