Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_B07.2
         (1285 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   252   5e-67
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    51   2e-06
AC084196-2|AAK39622.1|  355|Caenorhabditis elegans Hypothetical ...    31   1.8  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  252 bits (616), Expect = 5e-67
 Identities = 113/140 (80%), Positives = 127/140 (90%)
 Frame = +2

Query: 92  PGGIXTARQHVNHRREQRWADKEFKXAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPN 271
           P G+ TAR+   HR+EQRW DK +K AH+GT+WK+NPFGGASHAKGIVLEK+GVEAKQPN
Sbjct: 4   PKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPN 63

Query: 272 SAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVV 451
           SAIRKCVRVQLIKNGKK+TAFVP DGCLN +EENDEVLV+GFGR GHAVGDIPGVRFK+V
Sbjct: 64  SAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIV 123

Query: 452 KVANVSLLALYKEKKERPRS 511
           KVAN SL+AL+K KKERPRS
Sbjct: 124 KVANTSLIALFKGKKERPRS 143


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 50.8 bits (116), Expect = 2e-06
 Identities = 30/66 (45%), Positives = 43/66 (65%)
 Frame = +2

Query: 209 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLV 388
           G SH KGIVL+ V    K+PNS  RKC  V+L   G +V A++P  G  ++++E+ +VLV
Sbjct: 72  GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL-STGAEVCAYIPNVG--HNLQEHSQVLV 128

Query: 389 AGFGRK 406
            G GR+
Sbjct: 129 KG-GRR 133


>AC084196-2|AAK39622.1|  355|Caenorhabditis elegans Hypothetical
           protein Y55D5A.3 protein.
          Length = 355

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 27/113 (23%), Positives = 43/113 (38%)
 Frame = -1

Query: 427 NVTDGVTFTTESRH*YXXXXXXXX*ATVTGDECGHFLSVLNELYTDAFADGRVGLLSFYT 248
           N+T  V F       Y           +TG   G +   LN  Y+ A+ D    L+ FYT
Sbjct: 150 NITIHVDFVRNGTIQYSGLTFALYNGVLTGQRPGEYSVSLNARYSGAYIDNI--LMEFYT 207

Query: 247 NFLEDDALCVRCTTERVSLPFRTHVGXLEFFVRPSLFTTVVHVLTRRXDSSGV 89
            F    +  +R   E  +    T+   ++ F R  LF+    ++     + GV
Sbjct: 208 KFKRPVSFFIRDVLENQA----TYTEAVDAFSRTHLFSPSYIIVAGIKKNEGV 256


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,916,011
Number of Sequences: 27780
Number of extensions: 413550
Number of successful extensions: 873
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3589453552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)