Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_B05.2
         (1269 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0218 + 18219956-18220555                                         33   0.48 
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    31   2.6  
12_01_0816 + 7502669-7503145                                           29   7.8  
05_01_0462 - 3658153-3658290,3658394-3658540,3658622-3658720,365...    29   7.8  

>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 33.1 bits (72), Expect = 0.48
 Identities = 22/63 (34%), Positives = 27/63 (42%)
 Frame = -1

Query: 786 NGGFVHTAQLGANDLHRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKR 607
           NGG     ++ A    +T  P     R R   R E  G  + KR+GR R    G  RGKR
Sbjct: 81  NGGLTEGEEVAARPREKTARPDG--ARARRERRLEAAG--AEKREGRRRGGSSGGLRGKR 136

Query: 606 LVS 598
             S
Sbjct: 137 RAS 139


>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +2

Query: 506 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 664
           CWR  +        T  D Q    +    +KD    P + PSC L+F P   P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335


>12_01_0816 + 7502669-7503145
          Length = 158

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 805 RRSGRAERGVRAHSPAWSERPTPN*DTYSVSYEKAPRFPKGERR 674
           R SG  +R V    PAW ER   + ++ +V  E+A      ERR
Sbjct: 8   RSSGEGDRPVARWWPAWQEREKESLESSAVEGERATAEVGSERR 51


>05_01_0462 -
           3658153-3658290,3658394-3658540,3658622-3658720,
           3658802-3659253,3659597-3660280,3662072-3662180
          Length = 542

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
 Frame = +1

Query: 616 PGSSLVRSPVPTLPLTGYLSAFLPSGSVALS-HSSRCR-YLSSV*VVRSKLGCVHEPPVQ 789
           P S+ + +PVPTLP++   + F   G    S H +  R Y        S  G V   P  
Sbjct: 282 PQSTNISAPVPTLPISCDSAPFAHGGYAPRSAHRNNLRTYPPPAFASSSNPGAVSHEPAI 341

Query: 790 PDRCALSGNYRLESNPVRHDLSPLAAATGNRISXARYV 903
           P     + +Y   ++     + P  A     +   R+V
Sbjct: 342 PSYPPAAPSYPPATSAASSSVQPFHAEAAAHLRHPRHV 379


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,705,183
Number of Sequences: 37544
Number of extensions: 593053
Number of successful extensions: 1936
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1936
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3934202376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)