Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_B03.2
         (1498 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    28   0.61 
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    25   5.6  

>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 28.3 bits (60), Expect = 0.61
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = -2

Query: 312 ERREXEREXXXXXERERERE 253
           E+RE ERE     ERERERE
Sbjct: 511 EQREKEREREAARERERERE 530



 Score = 27.5 bits (58), Expect = 1.1
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -3

Query: 314 ERGEKXREXEXXXXRERERER 252
           E+ EK RE E    RERERER
Sbjct: 511 EQREKEREREAARERERERER 531



 Score = 27.1 bits (57), Expect = 1.4
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -1

Query: 349 REEDTXPPPPXXREERRXERXXXXEXERERERE 251
           RE          RE+R  ER      ERERERE
Sbjct: 498 RERQQREKEQREREQREKEREREAARERERERE 530



 Score = 25.4 bits (53), Expect = 4.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 349 REEDTXPPPPXXREERRXERXXXXEXERERERE 251
           RE++        R++R  E+    + E+ERERE
Sbjct: 488 REKEQREKEERERQQREKEQREREQREKERERE 520



 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 312 ERREXEREXXXXXEREREREXXXXXEXE 229
           ER++ E+E     +RE+ERE     E E
Sbjct: 499 ERQQREKEQREREQREKEREREAARERE 526



 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 313 REERRXERXXXXEXERERERE 251
           + E+  ER    E ERERERE
Sbjct: 512 QREKEREREAARERERERERE 532



 Score = 24.6 bits (51), Expect = 7.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 312 ERREXEREXXXXXEREREREXXXXXEXE 229
           ER + E+E      RERERE     E E
Sbjct: 509 EREQREKEREREAARERERERERERERE 536



 Score = 24.2 bits (50), Expect = 9.9
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 348 EKKTXXXPPPXXERREXEREXXXXXEREREREXXXXXEXE 229
           EK+         ++RE E+      E+ERERE     E E
Sbjct: 489 EKEQREKEERERQQREKEQREREQREKEREREAARERERE 528


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1173

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -1

Query: 343  EDTXPPPPXXREERRXE-RXXXXEXERERER 254
            E   PPPP  R ERR E         RER+R
Sbjct: 1076 ERLPPPPPSPRTERRREVNRLAVARLRERQR 1106


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 356,896
Number of Sequences: 2352
Number of extensions: 2571
Number of successful extensions: 29
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 175156245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)