Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_B02.2
         (1207 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   3.5  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   3.5  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    23   6.0  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 846 NPPXNPXXXPYPVTIVLXPTR 908
           NPP        PV +++ PTR
Sbjct: 225 NPPNTENNCAQPVVVIMSPTR 245


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 825 PSWAVCTNPPXNPXXXPYPVTIVLXPT 905
           P+  +C N P  P   P P+  +  PT
Sbjct: 166 PTGFLCNNYPPLPQVPPLPLPPIFPPT 192


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +1

Query: 247 IALFVTIISCNKQXNNNNCIHFMFQ 321
           +A+F+    C++    +NC+   FQ
Sbjct: 327 LAIFILYFICDEAHYASNCLRVQFQ 351


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,638
Number of Sequences: 336
Number of extensions: 3047
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 35144262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)