Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_A24.2
(1240 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938 38 0.016
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082... 34 0.27
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937... 33 0.46
02_01_0475 + 3422629-3422695,3422960-3423216 31 1.9
10_08_0966 + 21921343-21921354,21923196-21923264,21924165-21924266 31 2.5
08_02_0655 + 19738334-19739385,19739501-19739745,19740094-19740119 31 2.5
02_04_0103 - 19768288-19768737 31 2.5
11_04_0350 - 16658497-16659015 29 5.7
>05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938
Length = 331
Score = 37.9 bits (84), Expect = 0.016
Identities = 16/25 (64%), Positives = 16/25 (64%)
Frame = -3
Query: 323 FFFXNFFFFXXKFFXFFFFXFXIFF 249
FFF FFFF FF FFFF F FF
Sbjct: 62 FFFFFFFFFFFFFFFFFFFFFFFFF 86
Score = 35.1 bits (77), Expect = 0.12
Identities = 15/24 (62%), Positives = 15/24 (62%)
Frame = -3
Query: 338 FFXXXFFFXNFFFFXXKFFXFFFF 267
FF FFF FFFF FF FFFF
Sbjct: 62 FFFFFFFFFFFFFFFFFFFFFFFF 85
Score = 35.1 bits (77), Expect = 0.12
Identities = 15/24 (62%), Positives = 15/24 (62%)
Frame = -3
Query: 338 FFXXXFFFXNFFFFXXKFFXFFFF 267
FF FFF FFFF FF FFFF
Sbjct: 63 FFFFFFFFFFFFFFFFFFFFFFFF 86
Score = 34.7 bits (76), Expect = 0.15
Identities = 15/25 (60%), Positives = 15/25 (60%)
Frame = -3
Query: 335 FXXXFFFXNFFFFXXKFFXFFFFXF 261
F FFF FFFF FF FFFF F
Sbjct: 62 FFFFFFFFFFFFFFFFFFFFFFFFF 86
Score = 32.7 bits (71), Expect = 0.61
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -3
Query: 311 NFFFFXXKFFXFFFFXFXIFF 249
+FFFF FF FFFF F FF
Sbjct: 61 DFFFFFFFFFFFFFFFFFFFF 81
>05_03_0496 +
14706959-14707020,14707173-14707538,14708070-14708209,
14708319-14708566,14708814-14708946,14709096-14709159,
14709284-14709380,14709505-14709607,14709702-14709838,
14710063-14710152,14710240-14710401
Length = 533
Score = 33.9 bits (74), Expect = 0.27
Identities = 16/25 (64%), Positives = 16/25 (64%)
Frame = -3
Query: 323 FFFXNFFFFXXKFFXFFFFXFXIFF 249
FFF FFFF FF FFFF F FF
Sbjct: 87 FFFFFFFFF---FFFFFFFFFFFFF 108
Score = 31.9 bits (69), Expect = 1.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 323 FFFXNFFFFXXKFFXFFFFXFXIF 252
FFF FFFF FF FFFF ++
Sbjct: 90 FFFFFFFFFFFFFFFFFFFSGDVY 113
>02_04_0516 +
23593088-23593116,23593209-23593336,23593527-23593714,
23593861-23593919,23594997-23595345,23596081-23596333,
23596404-23597476
Length = 692
Score = 33.1 bits (72), Expect = 0.46
Identities = 19/40 (47%), Positives = 21/40 (52%)
Frame = +3
Query: 249 EKNXKXEKKKXKKFXXKKKKIXKKKXXXKKXXXXXX*KKK 368
+K K +KKK KK KKKK KKK KK KKK
Sbjct: 68 KKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKKK 107
Score = 32.3 bits (70), Expect = 0.81
Identities = 19/39 (48%), Positives = 20/39 (51%)
Frame = +3
Query: 261 KXEKKKXKKFXXKKKKIXKKKXXXKKXXXXXX*KKKXXK 377
K +KKK KK KKKK KKK KK KKK K
Sbjct: 68 KKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKK 106
Score = 31.9 bits (69), Expect = 1.1
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = +3
Query: 249 EKNXKXEKKKXKKFXXKKKKIXKKKXXXKKXXXXXX*KKK 368
+K K +KKK KK KKKK KKK KK KK+
Sbjct: 69 KKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKKKR 108
Score = 30.3 bits (65), Expect = 3.3
Identities = 18/39 (46%), Positives = 19/39 (48%)
Frame = +3
Query: 207 KKKKXXGXXXX*XXEKNXKXEKKKXKKFXXKKKKIXKKK 323
KKKK +K K KKK KK KKKK KKK
Sbjct: 69 KKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKKK 107
Score = 30.3 bits (65), Expect = 3.3
Identities = 18/39 (46%), Positives = 19/39 (48%)
Frame = +3
Query: 261 KXEKKKXKKFXXKKKKIXKKKXXXKKXXXXXX*KKKXXK 377
K +KKK KK KKKK KK KK KKK K
Sbjct: 69 KKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKKK 107
Score = 30.3 bits (65), Expect = 3.3
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = +3
Query: 207 KKKKXXGXXXX*XXEKNXKXEKKKXKKFXXKKKKIXKKKXXXKK 338
KKKK +K K +KKK KK KKKK KK+ K
Sbjct: 70 KKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKKKRWPSNK 113
Score = 29.9 bits (64), Expect = 4.3
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +3
Query: 198 KXXKKKKXXGXXXX*XXEKNXKXEKKKXKKFXXKKKK 308
K KKKK +KN K +KKK KK KKKK
Sbjct: 70 KKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKK 106
Score = 28.7 bits (61), Expect = 10.0
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = +3
Query: 207 KKKKXXGXXXX*XXEKNXKXEKKKXKKFXXKKKKIXKKK 323
KKKK +K K + KK KK KKKK KKK
Sbjct: 68 KKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKK 106
>02_01_0475 + 3422629-3422695,3422960-3423216
Length = 107
Score = 31.1 bits (67), Expect = 1.9
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = +3
Query: 249 EKNXKXEKKKXKKFXXKKKKIXKKKXXXKK 338
E+ K +KKK KK KKKK KKK KK
Sbjct: 40 EEGKKKKKKKKKKKKKKKKKKKKKKKKKKK 69
Score = 30.7 bits (66), Expect = 2.5
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = +3
Query: 252 KNXKXEKKKXKKFXXKKKKIXKKKXXXKK 338
K K +KKK KK KKKK KKK KK
Sbjct: 43 KKKKKKKKKKKKKKKKKKKKKKKKKKKKK 71
Score = 29.9 bits (64), Expect = 4.3
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +3
Query: 249 EKNXKXEKKKXKKFXXKKKKIXKKKXXXKK 338
E K +KKK KK KKKK KKK KK
Sbjct: 41 EGKKKKKKKKKKKKKKKKKKKKKKKKKKKK 70
Score = 29.1 bits (62), Expect = 7.6
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +3
Query: 249 EKNXKXEKKKXKKFXXKKKKIXKKKXXXK 335
+K K +KKK KK KKKK KKK K
Sbjct: 43 KKKKKKKKKKKKKKKKKKKKKKKKKKKKK 71
Score = 29.1 bits (62), Expect = 7.6
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 249 EKNXKXEKKKXKKFXXKKKKIXKKKXXXKK 338
+K K +KKK KK KKKK KKK K
Sbjct: 44 KKKKKKKKKKKKKKKKKKKKKKKKKKKKNK 73
>10_08_0966 + 21921343-21921354,21923196-21923264,21924165-21924266
Length = 60
Score = 30.7 bits (66), Expect = 2.5
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = +3
Query: 252 KNXKXEKKKXKKFXXKKKKIXKKKXXXKK 338
K K +KKK KK KKKK KKK KK
Sbjct: 28 KKKKKKKKKKKKKKKKKKKKKKKKKKKKK 56
Score = 29.1 bits (62), Expect = 7.6
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +3
Query: 249 EKNXKXEKKKXKKFXXKKKKIXKKKXXXK 335
+K K +KKK KK KKKK KKK K
Sbjct: 28 KKKKKKKKKKKKKKKKKKKKKKKKKKKKK 56
>08_02_0655 + 19738334-19739385,19739501-19739745,19740094-19740119
Length = 440
Score = 30.7 bits (66), Expect = 2.5
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = +3
Query: 252 KNXKXEKKKXKKFXXKKKKIXKKKXXXKK 338
K K +KKK KK KKKK KKK KK
Sbjct: 368 KTIKRKKKKKKKKKKKKKKKKKKKKKKKK 396
Score = 30.7 bits (66), Expect = 2.5
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = +3
Query: 252 KNXKXEKKKXKKFXXKKKKIXKKKXXXKK 338
K K +KKK KK KKKK KKK KK
Sbjct: 371 KRKKKKKKKKKKKKKKKKKKKKKKKKKKK 399
>02_04_0103 - 19768288-19768737
Length = 149
Score = 30.7 bits (66), Expect = 2.5
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = +3
Query: 252 KNXKXEKKKXKKFXXKKKKIXKKKXXXKK 338
K K +KKK KK KKKK KKK KK
Sbjct: 111 KRKKKKKKKKKKKKKKKKKKKKKKKKKKK 139
Score = 29.9 bits (64), Expect = 4.3
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 249 EKNXKXEKKKXKKFXXKKKKIXKKKXXXKK 338
EK + K+K KK KKKK KKK KK
Sbjct: 102 EKRRRKRKRKRKKKKKKKKKKKKKKKKKKK 131
Score = 29.9 bits (64), Expect = 4.3
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3
Query: 249 EKNXKXEKKKXKKFXXKKKKIXKKKXXXKK 338
++ K +KKK KK KKKK KKK KK
Sbjct: 107 KRKRKRKKKKKKKKKKKKKKKKKKKKKKKK 136
Score = 29.9 bits (64), Expect = 4.3
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3
Query: 249 EKNXKXEKKKXKKFXXKKKKIXKKKXXXKK 338
++ K +KKK KK KKKK KKK KK
Sbjct: 109 KRKRKKKKKKKKKKKKKKKKKKKKKKKKKK 138
>11_04_0350 - 16658497-16659015
Length = 172
Score = 29.5 bits (63), Expect = 5.7
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +3
Query: 252 KNXKXEKKKXKKFXXKKKKIXKKKXXXKK 338
K EKKK KK KKKK KKK KK
Sbjct: 26 KAPSTEKKKKKKKKKKKKKKKKKKKKKKK 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,730
Number of Sequences: 37544
Number of extensions: 9836
Number of successful extensions: 472
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3817805856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -