Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_A23.2
         (1231 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   1.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             25   1.0  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    25   1.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   1.8  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              23   4.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   7.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   9.5  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   9.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   9.5  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 431 QFVS*RRNKPPTSKKSETVCVVNAPRD 351
           Q +S R++K    KKS+T+  VNA  D
Sbjct: 63  QPISKRKDKEHKKKKSKTILAVNAEAD 89


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 431 QFVS*RRNKPPTSKKSETVCVVNAPRD 351
           Q +S R++K    KKS+T+  VNA  D
Sbjct: 63  QPISKRKDKEHKKKKSKTILAVNAEAD 89


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +3

Query: 795 LHIINYNWILNSVFYLFKQFIPAAVWSRLHFHGSNME 905
           L + +Y W  + + +L+K+  P  V   LH     +E
Sbjct: 176 LRMASYGWTTDDLVFLWKEGDPVQVVKNLHLPRFTLE 212


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +3

Query: 795 LHIINYNWILNSVFYLFKQFIPAAVWSRLHFHGSNME 905
           L + +Y W  + + +L+K+  P  V   LH     +E
Sbjct: 176 LRMASYGWTTDDLVFLWKEGDPVQVVKNLHLPRFTLE 212


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 445 KTFAKKTRTCTTVTRLDYNELKTSTEVLYP 534
           KTF      C  V  + + ELKT  + L P
Sbjct: 2   KTFVIIFAICVCVGAMTHEELKTGIQTLQP 31


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 556 ILPFSGLSGKVPP*TFLTRCS 494
           ++P  G+ G+  P  FLT CS
Sbjct: 178 LMPVMGVWGRFVPEGFLTSCS 198


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 294 TRHKVIEELRRMVRERGECIPRRVDDAYCLR 386
           TR +V E LRR V      +P+ +     +R
Sbjct: 435 TREQVTEALRRFVEGYPHAVPKYIQRLKAIR 465


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 294 TRHKVIEELRRMVRERGECIPRRVDDAYCLR 386
           TR +V E LRR V      +P+ +     +R
Sbjct: 350 TREQVTEALRRFVEGYPHAVPKYIQRLKAIR 380


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 294 TRHKVIEELRRMVRERGECIPRRVDDAYCLR 386
           TR +V E LRR V      +P+ +     +R
Sbjct: 669 TREQVTEALRRFVEGYPHAVPKYIQRLKAIR 699


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 301,726
Number of Sequences: 438
Number of extensions: 7027
Number of successful extensions: 24
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 41901987
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)