Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_A22.2
(1230 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 39 0.001
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 33 0.11
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 31 0.43
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 29 1.00
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 29 1.7
SPAC5H10.08c |pan6||pantoate-beta-alanine ligase |Schizosaccharo... 28 2.3
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 27 5.3
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 27 7.0
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar... 26 9.3
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 39.1 bits (87), Expect = 0.001
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 1/142 (0%)
Frame = +3
Query: 402 EIEDKIKQQYAESQHREKVLVRRLAAKEQEIQDYVSQITELKSSHASLNGRSTLLDPAVN 581
E E K+K + L+ + + + S+++ELK + L+ L ++N
Sbjct: 815 ESESKLKTDCENLTQQNMTLIDNVQKLMHKHVNQESKVSELKEVNGKLSLDLKNLRSSLN 874
Query: 582 VLILRLKQELTSTKARLEETQNELSAWKFTPDSNTG-KKLMAKCRLLHQENEDLGRMTSS 758
V I Q LT A L + + L + + N+G K L A+ +LLH ENE+L
Sbjct: 875 VAISDNDQILTQL-AELSKNYDSLE--QESAQLNSGLKSLEAEKQLLHTENEEL-----H 926
Query: 759 GRIAKLEGDLALQKSFSEEVKK 824
R+ KL G L +++S S ++ K
Sbjct: 927 IRLDKLTGKLKIEESKSSDLGK 948
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 32.7 bits (71), Expect = 0.11
Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 11/147 (7%)
Frame = +3
Query: 333 QDSYIDHLEKLNKQLEGGLE-KAKEIEDKIKQQYAESQHREKVLVRRLAAKEQEIQDYVS 509
Q S + + + +++ LE K +E D+I E+ K L RR++ E +++Y S
Sbjct: 310 QGSCTEKILRFKEKILDLLEMKQQEENDRISHIEYENDLTVKKLKRRISELEMAVKEYES 369
Query: 510 Q--ITELKSSHASLNGRSTLLDPAVNVLILR---LKQELT--STKARLEETQNELSAWKF 668
+ +E + + R L D + +LR LK+E ST +LEE +++ +
Sbjct: 370 EKSYSEKEYEEKISSLRIELEDKLAEIDMLRNKLLKEEHKHHSTSEKLEELSKYVASIQ- 428
Query: 669 TPDSNTGK---KLMAKCRLLHQENEDL 740
+ N G+ +L A+ + L + NED+
Sbjct: 429 DKERNNGQNALELQARIQQLERRNEDM 455
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 30.7 bits (66), Expect = 0.43
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 465 RRLAAKEQEIQDYVSQITELKSSHASLNGRSTLLDPAV 578
RR A +I+D+VS++ L+S H SLN + L + V
Sbjct: 308 RRQAKTVNQIRDFVSKLGSLQSEHTSLNIHTGLAETLV 345
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 29.5 bits (63), Expect = 1.00
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 1/123 (0%)
Frame = +3
Query: 405 IEDKIKQQYAESQHREKVLVRRLAAKEQEIQDYVSQITELKSSHASLNGRSTLLDPAVNV 584
++D++ Q +H+E VL +++ EQ++Q +Q E ++ + L + L +
Sbjct: 50 LKDQLVLQEVNHEHKENVLTKKINFLEQQLQSSNNQAEESRNLISVLRNENESLKTNLEN 109
Query: 585 LILRLKQELTSTKARLEETQNELSAW-KFTPDSNTGKKLMAKCRLLHQENEDLGRMTSSG 761
R LT+ L +EL K + + K + L EN LG S
Sbjct: 110 QNKRF-DALTTENQSLRRANSELQEQSKIASEQLSIAK--DQIEALQNENSHLGEQVQSA 166
Query: 762 RIA 770
A
Sbjct: 167 HQA 169
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 28.7 bits (61), Expect = 1.7
Identities = 26/105 (24%), Positives = 46/105 (43%)
Frame = +3
Query: 336 DSYIDHLEKLNKQLEGGLEKAKEIEDKIKQQYAESQHREKVLVRRLAAKEQEIQDYVSQI 515
++ ++ L+K NKQ LE+ + K S + L +A KEQ + Q+
Sbjct: 579 EATLNALQKQNKQKGEVLEQVVAESEAAKNMVESSNASIQQLKSEVADKEQTLAQLHLQL 638
Query: 516 TELKSSHASLNGRSTLLDPAVNVLILRLKQELTSTKARLEETQNE 650
E+ SL+ S AV+ L L+ ++ ++K +L E
Sbjct: 639 DEMTQRLVSLDEES----KAVSQRKLDLEYKINNSKTQLATATEE 679
>SPAC5H10.08c |pan6||pantoate-beta-alanine ligase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 283
Score = 28.3 bits (60), Expect = 2.3
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +3
Query: 522 LKSSHASLNGRSTLLDPAVNVLILRLKQELTSTKARLE----ETQNELSAWKFTPD 677
L S + L + P + ++ +L QEL++ LE ET ELS +F PD
Sbjct: 186 LSSRNGYLTSEERKIAPNLYKILKKLAQELSNGNGDLEKLIAETNTELSRCRFIPD 241
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/48 (22%), Positives = 29/48 (60%)
Frame = +3
Query: 390 EKAKEIEDKIKQQYAESQHREKVLVRRLAAKEQEIQDYVSQITELKSS 533
+K +E ED++KQ E + R + + L ++ ++ D+ +++ + K++
Sbjct: 410 QKVQEKEDRLKQSENELRTRHREMKAALEKQKADLIDHKNRLMQAKAA 457
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 26.6 bits (56), Expect = 7.0
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Frame = +3
Query: 354 LEKLNKQLEGGLEKA-KEIEDKIKQQYAESQHREKVLVRRLAAKEQEIQ-------DYVS 509
L+ + L+ LEK +E+E+++ Q+ + + R + ++ A Q+IQ +
Sbjct: 511 LKNNSADLKAQLEKQPQELENRLLQEISILKQRNQKFLKNNATSIQQIQYLDEELGKTLK 570
Query: 510 QITELKSSHASL 545
Q+ +LK HA L
Sbjct: 571 QLNDLKEKHAQL 582
>SPBC336.08 |spc24||spindle pole body protein
Spc24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 198
Score = 26.2 bits (55), Expect = 9.3
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Frame = +3
Query: 369 KQLEGGLEKAKEIEDKIKQQYAESQHREKVLVRR---------LAAKEQEIQDYVSQITE 521
K L LE + + + +KQ SQH E++L R L E EI SQ+ +
Sbjct: 51 KVLSRKLEISTQAMESLKQTAESSQHAEEILSREKEKFRIAKLLNITENEIMSLESQLQK 110
Query: 522 LKSSHASLNGR 554
+K L R
Sbjct: 111 MKEQLLQLEER 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,734,963
Number of Sequences: 5004
Number of extensions: 68173
Number of successful extensions: 215
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 667380970
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -