Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_A20.2
         (1277 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical ...    32   0.76 
Z81472-1|CAB03889.1|  173|Caenorhabditis elegans Hypothetical pr...    31   2.3  
Z78546-1|CAB01769.1|  364|Caenorhabditis elegans Hypothetical pr...    30   3.1  

>AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical
           protein Y40B1A.5 protein.
          Length = 134

 Score = 32.3 bits (70), Expect = 0.76
 Identities = 18/75 (24%), Positives = 20/75 (26%)
 Frame = -2

Query: 724 PPPPPPXXXKKKKXXXXFXXFXXXXXGXXKXXXXPXFPXKTFFXXPFXXGXXXXPXXFFX 545
           PPPPPP      +                     P  P  T    P        P     
Sbjct: 23  PPPPPPAPPALPRELTQISTETAAAVAALVRKPPPSLPPSTMPPGPHGMPFMGGPPPHHQ 82

Query: 544 FXXPXPPPXGXXPPP 500
           +    PPP G  PPP
Sbjct: 83  YHLQYPPPHGLGPPP 97


>Z81472-1|CAB03889.1|  173|Caenorhabditis elegans Hypothetical
           protein C16D6.1 protein.
          Length = 173

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
 Frame = -3

Query: 570 PXPPX----FFFXXGXPXPPPKGXPPPXXL 493
           P PP      +F  G P PPP G PPP  L
Sbjct: 54  PYPPYRHNTMWFNGGPPGPPPHGPPPPHLL 83


>Z78546-1|CAB01769.1|  364|Caenorhabditis elegans Hypothetical
           protein T21H8.3 protein.
          Length = 364

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 291 YTHNSFIFLIATVCLKCLILKLFVSRGALNFHLHLV 184
           Y H++ +FL+A     CLIL    +  A NF + L+
Sbjct: 46  YYHSNLLFLVALNAASCLILAGLTAWSATNFFVQLI 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,447,370
Number of Sequences: 27780
Number of extensions: 229333
Number of successful extensions: 1870
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1583
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3568584636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)