Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_A18.2
         (1258 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    29   1.8  
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar...    27   4.1  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    27   5.4  
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...    27   5.4  
SPAC9E9.14 |vps24||vacuolar sorting protein Vps24|Schizosaccharo...    27   5.4  

>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 195 EIMPLTADVAAQQVQERLRSLH-RLIYDIEAERSRNEQ 305
           E++    D+ ++ + E LR    +L+Y+IEAE  +N+Q
Sbjct: 692 EVLDEEVDLVSEPIPEPLRERQSQLLYEIEAEECQNKQ 729


>SPBC2F12.11c |rep2||transcriptional activator
           Rep2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 219

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 63  FCSFDXIKFTNGYYTKLVQNHHFGN 137
           F S D   F N Y   + QNH FG+
Sbjct: 47  FASSDDFAFMNAYCLPIQQNHQFGS 71


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 674 GSGDVPRVGRHRSAQRRRPLP 612
           G  + PRV R+ S  RR+PLP
Sbjct: 558 GDEESPRVSRNTSLARRKPLP 578


>SPAC222.06 |mak16||nuclear HMG-like acidic protein
           Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 687 AALVRVSDNEDNWILAEVVSWLPAQGKYEVDDIDEEQKN 803
           A L  VSD+ED   ++++  WL +    E  + +EE+ +
Sbjct: 209 AELEFVSDDEDEEEISDLEDWLGSDQSMETSESEEEESS 247


>SPAC9E9.14 |vps24||vacuolar sorting protein
           Vps24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +3

Query: 747 WLPAQGKYEVDDI-DEEQKNRHVLSKRRVVPLPLMRA 854
           +LP +   E+ D+ DE+++ + +L+K  V+P P  +A
Sbjct: 149 FLPVEDDEELMDLADEDEEVQEILTKYNVIPAPSEKA 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,401,563
Number of Sequences: 5004
Number of extensions: 63432
Number of successful extensions: 191
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 681602054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)