Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_A18.2
(1258 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553... 34 0.27
02_02_0240 + 8196140-8198248,8198381-8198650 31 1.4
08_02_0574 - 18867623-18868033,18869751-18870209 31 2.5
05_01_0169 - 1170614-1172098 31 2.5
12_02_0095 + 13559997-13560232,13561295-13561683,13562092-135623... 30 3.3
02_02_0119 + 6978697-6979045,6979519-6979581,6979757-6979866,697... 30 3.3
03_03_0069 + 14252184-14252810,14252876-14253523 30 4.4
12_01_1079 - 11223247-11223336,11223606-11223717,11224743-112248... 29 5.8
06_02_0245 + 13452864-13453096,13453169-13453223,13453316-13453438 29 5.8
02_05_0224 + 26948263-26948520,26948831-26948907,26949597-269496... 29 7.7
01_01_0562 + 4126368-4128196,4128517-4128715,4128827-4128886,412... 29 7.7
>07_01_0725 -
5532803-5533324,5533631-5533657,5534285-5534398,
5534564-5534731,5535951-5536193,5537178-5537261,
5537357-5538117,5539637-5539730,5540633-5540899,
5541311-5541316,5542538-5542657
Length = 801
Score = 33.9 bits (74), Expect = 0.27
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = -1
Query: 718 SSLSETRTSAATASPGRATCPASAGTAPHSGGARSPARPTCSGNVCAALRSSFISAPQP 542
S+ +E AA A+ G + P S+ PH G +PA P +G + +A ++ S QP
Sbjct: 163 SANAEESAPAAAANHGNSRLPRSSYVPPHLRGQAAPAAPAQAGALPSAAAAAQPSVGQP 221
>02_02_0240 + 8196140-8198248,8198381-8198650
Length = 792
Score = 31.5 bits (68), Expect = 1.4
Identities = 22/67 (32%), Positives = 30/67 (44%)
Frame = -1
Query: 724 QLSSLSETRTSAATASPGRATCPASAGTAPHSGGARSPARPTCSGNVCAALRSSFISAPQ 545
++S L+ SAA ++ A P +G AP A S A PT G A S+ P
Sbjct: 103 RVSELAAAPPSAAASAADAAPEPDESGAAPPP--ADSAAAPTVDGEAAKADHSAPFRVPP 160
Query: 544 PIVSLLP 524
P L+P
Sbjct: 161 PTKVLVP 167
>08_02_0574 - 18867623-18868033,18869751-18870209
Length = 289
Score = 30.7 bits (66), Expect = 2.5
Identities = 20/64 (31%), Positives = 27/64 (42%)
Frame = -1
Query: 763 P*AGNQLTTSANIQLSSLSETRTSAATASPGRATCPASAGTAPHSGGARSPARPTCSGNV 584
P AG+ T SA + T T AA A GR++ T+ H G A R +
Sbjct: 89 PCAGSSTTASAP------TSTSTRAAPACTGRSSSTGLPSTSGHQGSAAFACRKRAQNAI 142
Query: 583 CAAL 572
C A+
Sbjct: 143 CGAI 146
>05_01_0169 - 1170614-1172098
Length = 494
Score = 30.7 bits (66), Expect = 2.5
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = -1
Query: 382 WEDPDESSALEGDPVDFSALSMASMHCS---LRDLSASIS*INLCNDLNLSCTCCAATSA 212
W D DE GD DF+ L+ S H + A++ + LSC CC +A
Sbjct: 141 WVDADELLPFRGDGGDFALLAGQSAHAMPALTASVDAALGEVARRVAAGLSCCCCCDGAA 200
Query: 211 V 209
V
Sbjct: 201 V 201
>12_02_0095 +
13559997-13560232,13561295-13561683,13562092-13562387,
13562475-13563361,13563440-13563562,13563693-13563981,
13564211-13564249
Length = 752
Score = 30.3 bits (65), Expect = 3.3
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = -1
Query: 718 SSLSETRTSAATASPGRATCPASAGTAPHSGGARSPARPTCSGNVCAALRSSFISAPQPI 539
SS++ T T ATA AT PA+A T P + + P + ++C + S Q
Sbjct: 43 SSIAATATETATA----ATEPAAAATEPTA--STEPGAASTDRSICGVIGRQKFSILQDD 96
Query: 538 VSLLPA 521
+ L+PA
Sbjct: 97 IKLVPA 102
>02_02_0119 +
6978697-6979045,6979519-6979581,6979757-6979866,
6979969-6980154,6980266-6980361,6980493-6980564,
6980798-6980909,6982448-6982534,6982680-6983872
Length = 755
Score = 30.3 bits (65), Expect = 3.3
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = -1
Query: 742 TTSANIQLSSLSETRTSAATASPGRATCPASAGTAPHSGGARSPA 608
+T A +S ++ ++ AT + AT A A TAP + GA+SPA
Sbjct: 711 STEATTAAASQDQSASAPATGA-APATTAAPAPTAPENSGAQSPA 754
>03_03_0069 + 14252184-14252810,14252876-14253523
Length = 424
Score = 29.9 bits (64), Expect = 4.4
Identities = 22/62 (35%), Positives = 31/62 (50%)
Frame = -1
Query: 715 SLSETRTSAATASPGRATCPASAGTAPHSGGARSPARPTCSGNVCAALRSSFISAPQPIV 536
S + T +AA R T P G + + R R CSG V A+L SF+SA +P+
Sbjct: 63 SCTATVVTAAATVETRTTTPC--GRSCTTVRIRRLGRK-CSGAVAASLAVSFVSASEPVR 119
Query: 535 SL 530
S+
Sbjct: 120 SM 121
>12_01_1079 -
11223247-11223336,11223606-11223717,11224743-11224825,
11226061-11226173,11226261-11226337,11228626-11228719,
11229072-11229160,11230485-11230560,11231637-11231808
Length = 301
Score = 29.5 bits (63), Expect = 5.8
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 675 GDAVAALVRVSDNEDNWILAEVVSWLPAQGKYEVDDIDEE 794
G+ VAA V+ + +D W + +V+ + +YEV +DEE
Sbjct: 205 GEQVAAKVKSDEEKDEWFVVKVIHFDKETKEYEV--LDEE 242
>06_02_0245 + 13452864-13453096,13453169-13453223,13453316-13453438
Length = 136
Score = 29.5 bits (63), Expect = 5.8
Identities = 17/43 (39%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Frame = +1
Query: 580 RKRCRCTWGAR--GSGRLRCAERCRPTRGTSPDPGTPSLRSCG 702
R RCRC W R G G A RP T P P R G
Sbjct: 63 RYRCRCHWETRDKGLGAALVAMAARPLDSTPPAEEKPHWRRSG 105
>02_05_0224 +
26948263-26948520,26948831-26948907,26949597-26949658,
26949797-26949915,26950326-26950493,26950587-26950619
Length = 238
Score = 29.1 bits (62), Expect = 7.7
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 558 MKLLLSAAQTLPLHVGRAGERAPPLCGAVPADAGHVARPGDAVAALVR 701
++LL +AA P +P + A+P A H R AV+ LVR
Sbjct: 12 LRLLRTAAALSPFSSSAPPRHSPRILRAIPVGAPHPPRVSAAVSPLVR 59
>01_01_0562 +
4126368-4128196,4128517-4128715,4128827-4128886,
4129129-4129233,4129987-4130127,4130223-4130285,
4130925-4131152,4131250-4131333,4132000-4132157,
4132252-4132777,4133641-4133700,4133904-4134026,
4134906-4135181,4135282-4135347,4135500-4135631,
4135977-4136798,4137026-4137306,4137564-4137796,
4138022-4138260,4138367-4138558,4138808-4139080,
4139186-4139332
Length = 2078
Score = 29.1 bits (62), Expect = 7.7
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = -3
Query: 620 PLPRAPHVQRQRLRGTQEQLHQRPATDRLLVTRVTSL--NSTFILNCT 483
P P PH Q Q L T+ Q Q P + LV + L F++ C+
Sbjct: 64 PAPHHPHSQHQPLLPTRRQQQQPPPPYQALVASLAPLWREGLFLVRCS 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,865,397
Number of Sequences: 37544
Number of extensions: 482228
Number of successful extensions: 2240
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2234
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3887643768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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