Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_A18.2
         (1258 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   4.2  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            23   5.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   7.4  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   9.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   9.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   9.8  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   9.8  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -1

Query: 703 TRTSAATASPGRATCPASAGTAPHSGGARSPARPTCSG 590
           T T A T++PG  + PAS    P   G       T SG
Sbjct: 227 TATMATTSTPGSGSLPAS----PADSGVSDVESSTSSG 260


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 177 PTQIYSVDPADTHYYRNDDFAPIWYSNH 94
           P  I   +PA  +YY N D A I  ++H
Sbjct: 2   PILIPHRNPASANYYENKDGARIVKASH 29


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = -1

Query: 712 LSETRTSAATASPGRATCPASAGTAPHSGGARSPARPTCSGNVCAALRSSFISAPQPIVS 533
           L+ T T+AA A+P   + P  +  A  +GGA  P     +G   A       +A  P+ S
Sbjct: 41  LAGTSTTAA-ATPTPPSVPVGSAVAGTAGGALFPGM-AAAGKGAARSDDWLANANSPVGS 98


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 25  NSLDXPRLRWAFYF 66
           NSL+ P++R  FYF
Sbjct: 246 NSLNFPQIRGEFYF 259


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 450 VVFPLALQLLNLIYINF 400
           +VFP+A  + N++Y +F
Sbjct: 450 IVFPVAFIIFNILYWSF 466


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 25  NSLDXPRLRWAFYF 66
           NSL+ P++R  FYF
Sbjct: 246 NSLNFPQIRGEFYF 259


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 17/51 (33%), Positives = 20/51 (39%)
 Frame = -3

Query: 704 DPHERSDGVPGSGDVPRVGRHRSAQRRRPLPRAPHVQRQRLRGTQEQLHQR 552
           DP     GVPG       G   S Q+  P PR P   R  +R      HQ+
Sbjct: 53  DPSLLRQGVPGH----HYGAAGS-QQDMPYPRFPPYNRMDMRNATYYQHQQ 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,967
Number of Sequences: 438
Number of extensions: 4632
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42982554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)