Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_A17.2
         (1281 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    33   0.11 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.60 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.4  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    24   4.0  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -2

Query: 569 PPKXXPXXPXGGGFFFXXKXPPPPPPXXXKKK 474
           PP   P  P   GF    + PPPPPP   KK+
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36



 Score = 29.5 bits (63), Expect = 1.0
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -1

Query: 567 PKKXPPXXXGGGXFFXXKXPPPPPPXXXKKKK 472
           P   PP     G     + PPPPPP   KK+K
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = -1

Query: 567 PKKXPPXXXGGGXFFXXKXPPPPPPXXXKKKK 472
           P   PP       F     PPPPPP    KK+
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.60
 Identities = 17/54 (31%), Positives = 18/54 (33%)
 Frame = -1

Query: 657 PXXPXXGGXNPPPPPXXXXXXFFXGGXGXAPKKXPPXXXGGGXFFXXKXPPPPP 496
           P  P  GG  PPPPP         G     P   PP    GG  +    P   P
Sbjct: 753 PPAPIMGGPPPPPPPPG-----VAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEP 801


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 16/46 (34%), Positives = 16/46 (34%)
 Frame = -3

Query: 952 GXXXXPPLSPGXXXXXFFFXXGXXKXGXXGGFXGGXPGFFXXXXGF 815
           G    PP  PG       F       G  GGF GG  GF     GF
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGF 240


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 24.2 bits (50), Expect(2) = 4.0
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 509  PPPPPPXXXKKK 474
            PPPPPP   +KK
Sbjct: 1097 PPPPPPAEVEKK 1108



 Score = 21.4 bits (43), Expect(2) = 4.0
 Identities = 8/21 (38%), Positives = 8/21 (38%)
 Frame = -2

Query: 554  PXXPXGGGFFFXXKXPPPPPP 492
            P  P           PPPPPP
Sbjct: 1080 PSAPVANNVSKPSAVPPPPPP 1100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.148    0.488 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,136,048
Number of Sequences: 5004
Number of extensions: 26027
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 697499478
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)