Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_A14.2
(1345 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 35 0.13
02_05_0686 - 30900748-30902167,30903442-30904742 35 0.17
09_02_0603 - 11150739-11150746,11150791-11151340 34 0.22
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 31 1.6
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 31 2.7
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 30 3.6
05_07_0102 + 27700395-27700426,27701034-27702087,27703205-27703420 30 4.8
07_03_1136 + 24218601-24218734,24218769-24219906 29 8.4
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 35.1 bits (77), Expect = 0.13
Identities = 37/153 (24%), Positives = 39/153 (25%)
Frame = -1
Query: 949 PPXXXXGFFSXPPLXGGXPPPXXXXPXXXXXXPPPXPGGKXGXFFFXPXFXKXGPRGXFL 770
P G PP G PP P PPP P G G P G
Sbjct: 1090 PTLGDYGVAPPPPSIGAGAPPPPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVP 1149
Query: 769 GXXPFFFXXXGVXPPXXWXXXXXXXXXXXXXXXXPPPXPXFGFXXLFGPFXXNFFXXXXP 590
P PP PPP P G + GP P
Sbjct: 1150 PPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGP----------P 1199
Query: 589 LFXXXPFXPLXGGKXPXPPPXPGXXXFFXGXGG 491
P P+ G PPP PG GG
Sbjct: 1200 TPPGAPAPPMPPGVPGGPPPPPGGRGLPAPPGG 1232
Score = 29.9 bits (64), Expect = 4.8
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = +3
Query: 450 PXPXGXGGXXXGXXPPXPXKKXXXPGFGGGXGXXPPXRGXXGXXXKRG 593
P P G GG PP PG GG P RG RG
Sbjct: 1187 PPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPPGGRGLPAPPGGRG 1234
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 34.7 bits (76), Expect = 0.17
Identities = 18/42 (42%), Positives = 18/42 (42%)
Frame = -1
Query: 949 PPXXXXGFFSXPPLXGGXPPPXXXXPXXXXXXPPPXPGGKXG 824
PP G PP G PPP P PPP PGGK G
Sbjct: 337 PPPPPKGPPPPPPAKGPPPPPPPKGPSPP---PPPPPGGKKG 375
>09_02_0603 - 11150739-11150746,11150791-11151340
Length = 185
Score = 34.3 bits (75), Expect = 0.22
Identities = 23/67 (34%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Frame = -1
Query: 949 PPXXXXGFFSXPPLXGGXPPP---XXXXPXXXXXXPPPXPGGKXGXFFFXPXFXKXGPRG 779
PP G F+ PP G PPP P PPP P G FF P + P
Sbjct: 27 PPRLEKGNFALPPPFGFPPPPPPGSTFVPLPQSGVPPPPP---LGSFFVPPPQSRVPPPP 83
Query: 778 XFLGXXP 758
LG P
Sbjct: 84 PQLGVPP 90
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 31.5 bits (68), Expect = 1.6
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Frame = -1
Query: 916 PPLXGGXPPPXXXXPXXXXXXPPPXPGGKXGXFF----FXPXFXKXGPRG 779
PP+ PP P PPP P G G + F P + GP G
Sbjct: 717 PPVYAPYPPGITPSPPEYAPEPPPGPPGGGGGYLPPVVFPPPYASRGPPG 766
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 30.7 bits (66), Expect = 2.7
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = -1
Query: 574 PFXPLXGGKXPXPPPXPGXXXFFXGXGGXXPKXXPPXPXGXG 449
P P G P PPP PG G GG P P P G
Sbjct: 358 PAAPRPPGPGPGPPPPPGAAG--RGGGGPPPPALPGGPRARG 397
>08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 30.3 bits (65), Expect = 3.6
Identities = 23/83 (27%), Positives = 25/83 (30%)
Frame = -1
Query: 1087 FFXPXXPPXXXFXXPXNPFFXFXXXXXPXXKXFXPGGXXXXFXXXXPPXXXXGFFSXPPL 908
F P PP P P F F P + P + PP S PP
Sbjct: 51 FLAPPPPPPPGPPPPHQPQFNFGPG--PPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPP- 107
Query: 907 XGGXPPPXXXXPXXXXXXPPPXP 839
PPP P PPP P
Sbjct: 108 --PPPPPPPSPPPSAPPPPPPPP 128
>05_07_0102 + 27700395-27700426,27701034-27702087,27703205-27703420
Length = 433
Score = 29.9 bits (64), Expect = 4.8
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = +3
Query: 834 PPGXGGGXXKXXXGXXXXGGGXPPXRGGXEKNPXXXXGG 950
P G GGG + G GGG RG P GG
Sbjct: 24 PRGCGGGGPRSGGGGGPRGGGGGGPRGSGSSKPRRGDGG 62
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.1 bits (62), Expect = 8.4
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +3
Query: 450 PXPXGXGGXXXGXXPPXPXKKXXXPGFGGGXGXXPPXRGXXG 575
P P G GG PG GGG G PP G G
Sbjct: 98 PGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGG 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.150 0.494
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,350,491
Number of Sequences: 37544
Number of extensions: 439675
Number of successful extensions: 960
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4225193676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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