Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_A13.2
         (1343 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   6.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   8.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   8.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   8.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +1

Query: 526 AYVRCTVQLHTDSCGRGAYHRPQQSIHQTLIQSFIKA*NRISNLFDGTFK 675
           A+  C+     D  G      P       L+++     NRISN ++G+F+
Sbjct: 426 AFRNCSDLKELDLSGNELTSVPDALRDLALLKTLDLGENRISNFYNGSFR 475


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 579  VPPPATIHSPNANSII 626
            +PP AT  SPN+ +++
Sbjct: 1501 IPPAATFLSPNSTTLV 1516


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 579  VPPPATIHSPNANSII 626
            +PP AT  SPN+ +++
Sbjct: 1497 IPPAATFLSPNSTTLV 1512


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 180 VMDQNNNSKNKYTV*SFWVWV 242
           + + NNN+ NKY    +++WV
Sbjct: 134 INNTNNNNTNKYK--DYYIWV 152


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,328
Number of Sequences: 438
Number of extensions: 3834
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 46464381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)