Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_A09.2
         (1268 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.26 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    26   0.80 
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    25   1.9  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    25   1.9  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    25   1.9  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    25   1.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.3  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    23   7.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   9.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   9.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   9.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   9.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 27.5 bits (58), Expect = 0.26
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +2

Query: 809 PVLLP--VSPPTPYPNIWSQPPQXTLFPXQKPIDVRQPP 919
           P LLP    PP   P +  QP Q +  P  +P+D+   P
Sbjct: 481 PTLLPQWCLPPREAPLVGVQPHQDSATPADQPLDLSAKP 519



 Score = 23.8 bits (49), Expect = 3.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 575 GELPLSPQHPLYPNITPRPVPVLISQPTEFLTTTT 679
           G L      PL+P  +   +P  I+  T   TTTT
Sbjct: 84  GNLEQIGSRPLHPPASSTSLPATITTTTTTTTTTT 118


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.8 bits (54), Expect = 0.80
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 740 TQETETRLEPHPIQIPKPNPQPAPVLLPVSPPTPYPNIWSQPPQXTL 880
           TQETE RL P P +  +  P    +  P+S  T  P+ + + P  TL
Sbjct: 630 TQETEERLPPLPPKRIRKMPSMPLLPRPISCHTT-PDSFIEAPNKTL 675


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
 Frame = +2

Query: 779 QIPKPNPQPAPVLLPVSPPT---PYPNIWSQPPQXTLFPXQKPIDVRQPP 919
           QIP P P P PV     PP    P+ +I  Q P+        P     PP
Sbjct: 110 QIPVPVPVPVPVYYGNFPPRSMGPWISIQEQIPRFRHIGPSTPFPRFIPP 159


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
 Frame = +2

Query: 779 QIPKPNPQPAPVLLPVSPPT---PYPNIWSQPPQXTLFPXQKPIDVRQPP 919
           QIP P P P PV     PP    P+ +I  Q P+        P     PP
Sbjct: 110 QIPVPVPVPVPVYYGNFPPRSMGPWISIQEQIPRFRHIGPSTPFPRFIPP 159


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
 Frame = +2

Query: 779 QIPKPNPQPAPVLLPVSPPT---PYPNIWSQPPQXTLFPXQKPIDVRQPP 919
           QIP P P P PV     PP    P+ +I  Q P+        P     PP
Sbjct: 110 QIPVPVPVPVPVYYGNFPPRSMGPWISIQEQIPRFRHIGPSTPFPRFIPP 159


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
 Frame = +2

Query: 779 QIPKPNPQPAPVLLPVSPPT---PYPNIWSQPPQXTLFPXQKPIDVRQPP 919
           QIP P P P PV     PP    P+ +I  Q P+        P     PP
Sbjct: 343 QIPVPVPVPVPVYYGNFPPRSMGPWISIQEQIPRFRHIGPSTPFPRFIPP 392


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 341 STNTSVPEPQPEQVPISTLPGLQPSPITG 427
           S+    P+P P Q P +   G  P+P  G
Sbjct: 17  SSGAPGPQPSPHQSPQAPQRGSPPNPSQG 45



 Score = 22.6 bits (46), Expect = 7.5
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 368 QPEQVPISTLPGLQPSP 418
           Q  Q P S  PG QPSP
Sbjct: 11  QQSQQPSSGAPGPQPSP 27



 Score = 22.6 bits (46), Expect = 7.5
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 791 PNPQPAPVLLPVSPPTPYPNIWSQPP 868
           P PQP+P   P +P    P   SQ P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGP 46


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
 Frame = +2

Query: 779 QIPKPNPQPAPV----LLPVSPPTPYPNIWSQPPQXTLFPXQKPIDVRQPP 919
           QIP P P P PV     LP  P  P+ +I  Q P+        P     PP
Sbjct: 110 QIPVPVPIPVPVYYGNFLP-RPMGPWISIQEQIPRFRHIGPSTPFPRFIPP 159


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 740 TQETETRLEPHPIQIPKPNPQPAPVLLPVS 829
           T E   +  PHPI++ K     A +  PV+
Sbjct: 444 TAELRKKEPPHPIRVAKTIDVIARITFPVA 473


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 740 TQETETRLEPHPIQIPKPNPQPAPVLLPVS 829
           T E   +  PHPI++ K     A +  PV+
Sbjct: 430 TAELRKKEPPHPIRVAKTIDVIARITFPVA 459


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 740 TQETETRLEPHPIQIPKPNPQPAPVLLPVS 829
           T E   +  PHPI++ K     A +  PV+
Sbjct: 464 TAELRKKEPPHPIRVAKTIDVIARITFPVA 493


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 740 TQETETRLEPHPIQIPKPNPQPAPVLLPVS 829
           T E   +  PHPI++ K     A +  PV+
Sbjct: 413 TAELRKKEPPHPIRVAKTIDVIARITFPVA 442


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 267,799
Number of Sequences: 438
Number of extensions: 6801
Number of successful extensions: 21
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43462806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)