Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_A07.2
         (1377 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0487 + 16471538-16471540,16471694-16471795,16471880-164719...    56   5e-08
08_01_0212 - 1680199-1680240,1680661-1680723,1681620-1681729,168...    31   2.1  

>04_03_0487 +
           16471538-16471540,16471694-16471795,16471880-16471908,
           16472619-16472745
          Length = 86

 Score = 56.4 bits (130), Expect = 5e-08
 Identities = 26/49 (53%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
 Frame = +2

Query: 212 QCPGCXXAVXXFFVTHXR-VVVCAGCSTLLCQPTGGRAXFTXGCSFSSK 355
           +C GC      F  +H + VVVC GC T+LCQPTGG+A  T GCSF  K
Sbjct: 38  KCQGCFNITTVF--SHSQTVVVCPGCQTVLCQPTGGKARLTEGCSFRRK 84


>08_01_0212 -
           1680199-1680240,1680661-1680723,1681620-1681729,
           1681869-1682101,1683000-1683092,1683895-1683974,
           1685148-1685156,1685243-1685245
          Length = 210

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +2

Query: 197 VPGLCQCPGCXX--AVXXFFVTHXRVVVCAGCSTLLCQPTGGRAXFTXGCS 343
           V G+C CPGC    AV    V     ++C+GC TLL    G        C+
Sbjct: 83  VAGVC-CPGCNTLTAVNPSAVADMSELICSGCPTLLFYNRGASNIRCPSCN 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,139,154
Number of Sequences: 37544
Number of extensions: 250846
Number of successful extensions: 892
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4353229848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)