Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_A07.2
(1377 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U57847-1|AAB02266.1| 84|Homo sapiens ribosomal protein S27 pro... 66 4e-10
L19739-1|AAA59867.1| 84|Homo sapiens metallopanstimulin protein. 66 4e-10
BC070219-1|AAH70219.1| 84|Homo sapiens ribosomal protein S27 (... 66 4e-10
BC003667-1|AAH03667.1| 84|Homo sapiens ribosomal protein S27-l... 66 4e-10
BC002658-1|AAH02658.1| 84|Homo sapiens ribosomal protein S27 (... 66 4e-10
AL358472-19|CAI14033.1| 84|Homo sapiens ribosomal protein S27 ... 66 4e-10
AB061845-1|BAB79483.1| 84|Homo sapiens ribosomal protein S27 p... 66 4e-10
BC047648-1|AAH47648.1| 113|Homo sapiens RPS27L protein protein. 56 4e-07
AB007162-1|BAA25825.1| 69|Homo sapiens ribosomal protein S27 p... 50 3e-05
>U57847-1|AAB02266.1| 84|Homo sapiens ribosomal protein S27
protein.
Length = 84
Score = 65.7 bits (153), Expect = 4e-10
Identities = 29/51 (56%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = +2
Query: 212 QCPGCXXAVXXFFVTHXR-VVVCAGCSTLLCQPTGGRAXFTXGCSFSSKQH 361
+CPGC F +H + VV+C GCST+LCQPTGG+A T GCSF KQH
Sbjct: 36 KCPGCYKITTVF--SHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
>L19739-1|AAA59867.1| 84|Homo sapiens metallopanstimulin protein.
Length = 84
Score = 65.7 bits (153), Expect = 4e-10
Identities = 29/51 (56%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = +2
Query: 212 QCPGCXXAVXXFFVTHXR-VVVCAGCSTLLCQPTGGRAXFTXGCSFSSKQH 361
+CPGC F +H + VV+C GCST+LCQPTGG+A T GCSF KQH
Sbjct: 36 KCPGCYKITTVF--SHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
>BC070219-1|AAH70219.1| 84|Homo sapiens ribosomal protein S27
(metallopanstimulin 1) protein.
Length = 84
Score = 65.7 bits (153), Expect = 4e-10
Identities = 29/51 (56%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = +2
Query: 212 QCPGCXXAVXXFFVTHXR-VVVCAGCSTLLCQPTGGRAXFTXGCSFSSKQH 361
+CPGC F +H + VV+C GCST+LCQPTGG+A T GCSF KQH
Sbjct: 36 KCPGCYKITTVF--SHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
>BC003667-1|AAH03667.1| 84|Homo sapiens ribosomal protein S27-like
protein.
Length = 84
Score = 65.7 bits (153), Expect = 4e-10
Identities = 29/51 (56%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = +2
Query: 212 QCPGCXXAVXXFFVTHXR-VVVCAGCSTLLCQPTGGRAXFTXGCSFSSKQH 361
+CPGC F +H + VV+C GCST+LCQPTGG+A T GCSF KQH
Sbjct: 36 KCPGCYKITTVF--SHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
>BC002658-1|AAH02658.1| 84|Homo sapiens ribosomal protein S27
(metallopanstimulin 1) protein.
Length = 84
Score = 65.7 bits (153), Expect = 4e-10
Identities = 29/51 (56%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = +2
Query: 212 QCPGCXXAVXXFFVTHXR-VVVCAGCSTLLCQPTGGRAXFTXGCSFSSKQH 361
+CPGC F +H + VV+C GCST+LCQPTGG+A T GCSF KQH
Sbjct: 36 KCPGCYKITTVF--SHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
>AL358472-19|CAI14033.1| 84|Homo sapiens ribosomal protein S27
(metallopanstimulin 1) protein.
Length = 84
Score = 65.7 bits (153), Expect = 4e-10
Identities = 29/51 (56%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = +2
Query: 212 QCPGCXXAVXXFFVTHXR-VVVCAGCSTLLCQPTGGRAXFTXGCSFSSKQH 361
+CPGC F +H + VV+C GCST+LCQPTGG+A T GCSF KQH
Sbjct: 36 KCPGCYKITTVF--SHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
>AB061845-1|BAB79483.1| 84|Homo sapiens ribosomal protein S27
protein.
Length = 84
Score = 65.7 bits (153), Expect = 4e-10
Identities = 29/51 (56%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = +2
Query: 212 QCPGCXXAVXXFFVTHXR-VVVCAGCSTLLCQPTGGRAXFTXGCSFSSKQH 361
+CPGC F +H + VV+C GCST+LCQPTGG+A T GCSF KQH
Sbjct: 36 KCPGCYKITTVF--SHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH 84
>BC047648-1|AAH47648.1| 113|Homo sapiens RPS27L protein protein.
Length = 113
Score = 55.6 bits (128), Expect = 4e-07
Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +2
Query: 212 QCPGCXXAVXXFFVTHXR-VVVCAGCSTLLCQPTGGRAXFTXGCSFSSKQ 358
+CPGC F +H + VV+C GCST+LCQPTGG+A T G SF Q
Sbjct: 52 KCPGCYKITTVF--SHAQTVVLCVGCSTVLCQPTGGKARLTEGISFGILQ 99
>AB007162-1|BAA25825.1| 69|Homo sapiens ribosomal protein S27
protein.
Length = 69
Score = 49.6 bits (113), Expect = 3e-05
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 212 QCPGCXXAVXXFFVTHXR-VVVCAGCSTLLCQPTGGRAXFT 331
+CPGC F +H + VV+C GCST+LCQPTGG+A T
Sbjct: 31 KCPGCYKITTVF--SHAQTVVLCVGCSTVLCQPTGGKARLT 69
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,740,615
Number of Sequences: 237096
Number of extensions: 1319394
Number of successful extensions: 3300
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3246
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 20005333910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -