Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_A07.2
         (1377 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal pro...    56   6e-08
AL132949-13|CAB70106.2|  425|Caenorhabditis elegans Hypothetical...    29   5.8  
AF197575-1|AAF18441.1|  425|Caenorhabditis elegans ASC-1 protein.      29   5.8  

>AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 27 protein.
          Length = 83

 Score = 56.0 bits (129), Expect = 6e-08
 Identities = 25/49 (51%), Positives = 30/49 (61%)
 Frame = +2

Query: 212 QCPGCXXAVXXFFVTHXRVVVCAGCSTLLCQPTGGRAXFTXGCSFSSKQ 358
           +C GC   +   F     VVVC GC+T+LCQPT G+A  T GCSF  KQ
Sbjct: 36  KCSGCFK-ISTVFSHATTVVVCVGCNTVLCQPTRGKAKLTEGCSFRKKQ 83


>AL132949-13|CAB70106.2|  425|Caenorhabditis elegans Hypothetical
           protein Y53F4B.15 protein.
          Length = 425

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 254 THXRVVVCAGCSTLLCQPTGGRAXFTXG 337
           TH  ++ C GC  ++C+  G    FT G
Sbjct: 44  THKLILNCLGCGRIVCEQEGSGPCFTCG 71


>AF197575-1|AAF18441.1|  425|Caenorhabditis elegans ASC-1 protein.
          Length = 425

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 254 THXRVVVCAGCSTLLCQPTGGRAXFTXG 337
           TH  ++ C GC  ++C+  G    FT G
Sbjct: 44  THKLILNCLGCGRIVCEQEGSGPCFTCG 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,410,033
Number of Sequences: 27780
Number of extensions: 173216
Number of successful extensions: 429
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3892097572
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)