Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP14_F_A06.2
(1269 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 46 8e-06
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 37 0.007
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 36 0.016
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 35 0.027
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 34 0.036
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 33 0.11
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 32 0.15
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 32 0.15
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 32 0.19
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 31 0.45
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 30 0.59
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 30 0.59
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 29 1.4
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 28 2.4
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 28 3.2
SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr ... 27 5.5
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 27 7.3
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 26 9.6
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 46.4 bits (105), Expect = 8e-06
Identities = 21/68 (30%), Positives = 34/68 (50%)
Frame = +2
Query: 164 QTXVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTF 343
+T +FVG +P + ED+ F+ +G + +C +MN GFV ++ A + F
Sbjct: 3 ETRLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEF 62
Query: 344 NGGVISVE 367
G I VE
Sbjct: 63 MGSRIVVE 70
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 36.7 bits (81), Expect = 0.007
Identities = 31/127 (24%), Positives = 40/127 (31%), Gaps = 3/127 (2%)
Frame = +2
Query: 173 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM--NRCGFVHMQTEEQAAAAIRALHNSTFN 346
VFVG L + E+L+ LF+ FG + I CGFV + A AI L
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLG 364
Query: 347 GGVISVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVRHAPPPRD-APYMRDRPGPVR 523
I + P PP +PY P P+
Sbjct: 365 NSRIRLSWGRNQNPIAAPALNYQSQVSQTTIPATSLFPAMSLPPQAQFSPYPAVAPSPLA 424
Query: 524 GYERGPP 544
RG P
Sbjct: 425 LQTRGAP 431
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 35.5 bits (78), Expect = 0.016
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Frame = +2
Query: 173 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMN-------RCGFVHMQTEEQAAAAIRALH 331
V+VG+L + +L++ + G V C+I+N C + T E+A AI+ L
Sbjct: 68 VYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLS 127
Query: 332 NSTFNGGVISV 364
N F G ++ +
Sbjct: 128 NQKFMGRLVYI 138
Score = 26.6 bits (56), Expect = 7.3
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Frame = +2
Query: 173 VFVGSLPQGSKPEDLRKLFERFGVVTECDI-------MNRCGFVHMQTEEQAAAAIRALH 331
++VG+LP + +L LF G V I G V + E AA++I L+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 332 NSTFNG 349
+ G
Sbjct: 342 GYRYGG 347
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 34.7 bits (76), Expect = 0.027
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Frame = +2
Query: 173 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMN---------RCGFVHMQTEEQAAAAIRA 325
++VG L + DL F RFG V+ +I+N R +++ +T+E ++
Sbjct: 7 IYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKCKS 66
Query: 326 -LHNSTFNGGVISVE 367
L N+TF G + +E
Sbjct: 67 YLSNATFKGSKLRIE 81
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 34.3 bits (75), Expect = 0.036
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 13/78 (16%)
Frame = +2
Query: 173 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR-------------CGFVHMQTEEQAAA 313
++VG+LP + DL +LFE FG ++ +++R F+ + + A
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 314 AIRALHNSTFNGGVISVE 367
AI +L+ S+F G + VE
Sbjct: 82 AIASLNGSSFQGNTLKVE 99
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 32.7 bits (71), Expect = 0.11
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 173 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM--NRCGFVHMQTEEQAAAAIRALHNSTFN 346
VF+G+LP G +++R+ E FG + + I+ FVH AAAI+A+ N
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFL---NIAAAIKAVQELPLN 264
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 32.3 bits (70), Expect = 0.15
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +2
Query: 167 TXVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFN 346
T V+V LP+ ++LR F FG + + N G + A AI ++N +
Sbjct: 176 TAVYVHQLPENITTQELRSYFLHFGEILYTQVNNNSGRIVFAQRYFAEQAINEMNNFPLH 235
Query: 347 G 349
G
Sbjct: 236 G 236
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 32.3 bits (70), Expect = 0.15
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 173 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR--CGFVHMQTEEQAAAAIRAL 328
VF+G+LP +++ + F +FG + I+++ FVH A +R L
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTL 354
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 31.9 bits (69), Expect = 0.19
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +2
Query: 152 IMVPQTXVFVGSLPQGSKPEDLRKLFERFGVVTECDIMN---RCGFVHMQTEEQAAAAIR 322
I V +F+G + + + LR +FERFG V I+N R GF+ M + A A
Sbjct: 401 IKVYSRTLFLGGITRSVREPVLRSMFERFGSVQSL-ILNHNYRHGFLKMFRRDAAEKAQV 459
Query: 323 ALHNSTF 343
A+ N F
Sbjct: 460 AMENVPF 466
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 30.7 bits (66), Expect = 0.45
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 161 PQTXVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 265
P+ +FV L ++ EDL +F RFG + C ++
Sbjct: 242 PENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVI 276
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 30.3 bits (65), Expect = 0.59
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Frame = +2
Query: 173 VFVGSLPQG-SKPEDLRKLFERFGVVTECDIMNR-----CG--FVHMQTEEQAAAAIRAL 328
+ + +LP KP+ L F +FG V E I + CG FV M+ + A A+ +L
Sbjct: 109 LIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSL 168
Query: 329 HNSTFNGGVISVE 367
+ + +G I+V+
Sbjct: 169 NGTEIDGRPIAVD 181
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 30.3 bits (65), Expect = 0.59
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 173 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM 265
+F+G L + + LR FE+FG V +C +M
Sbjct: 165 MFIGGLNWETTDDSLRDYFEQFGEVLDCTVM 195
Score = 27.5 bits (58), Expect = 4.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 173 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM 265
+FVG +P E+ R F +FG V + +M
Sbjct: 249 MFVGGVPGDCTEEEFRNFFNQFGRVLDATLM 279
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +2
Query: 686 EGTRRYDEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMY 823
E R+D+PP A+ P P P+G +Y+ P P Y
Sbjct: 232 ERRSRFDQPPSKRMALTSTARESVPAPLPSPPSGPIYTYTYPKPAY 277
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 173 VFVGSLPQGSKPEDLRKLFERFGVVTECDI 262
VFVG L +K ++R LFE G V + I
Sbjct: 46 VFVGRLSTSTKKSEIRSLFETVGTVRKVTI 75
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.9 bits (59), Expect = 3.2
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +2
Query: 173 VFVGSLPQGS-KPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFNG 349
+F+G L S +L K+F+ +G + + + GFV T E A A+ A + G
Sbjct: 365 LFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCARALNAEQGNFVRG 424
Query: 350 GVISVE 367
+ +E
Sbjct: 425 QKLHLE 430
>SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 247
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 493 IHEGPARSGARLRTRSAGGAL*RALCVRRGPAWVRADG 606
I++ P +SG R+ AG L LC + G + DG
Sbjct: 163 IYQHPVQSGMRVLELGAGTGLVSILCAKMGSIVLATDG 200
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 26.6 bits (56), Expect = 7.3
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Frame = +2
Query: 173 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAIRALH 331
VF+ +L + L F FG + C + GFVH + E A AAI ++
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229
Query: 332 NSTFN 346
N
Sbjct: 230 GMLLN 234
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 26.2 bits (55), Expect = 9.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 91 KKRAHEDQXNPKGVKGEVCKE 29
K AH+ NP+G+ G VC E
Sbjct: 965 KAWAHDHDNNPEGIFGNVCLE 985
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,248,734
Number of Sequences: 5004
Number of extensions: 57061
Number of successful extensions: 164
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 689550766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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