Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_A05.2
         (1330 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymera...    44   5e-05
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    28   2.5  

>SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymerase
           I and III subunit Rpc19 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 44.0 bits (99), Expect = 5e-05
 Identities = 20/43 (46%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
 Frame = +2

Query: 197 VACCGSPVPHPAASKMHFRLQ-ASATPALEVLKSGLKALAMVC 322
           V  CG  +PHP+ +KM+FR+Q A +T A++VL+ GL  L  +C
Sbjct: 60  VEFCGYSIPHPSEAKMNFRIQTAPSTTAVDVLRKGLDDLIDLC 102


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +2

Query: 224  HPAASKMHFRLQASATPALEVLKSGLKALAMVCAHTINLFDKXVK 358
            H A S + F+L     P LEV K+ +K L  VCA   NL  + V+
Sbjct: 928  HWAISLLIFQLY---DPCLEVCKTAVKVLNEVCARNENLLAQVVQ 969


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,792,209
Number of Sequences: 5004
Number of extensions: 36982
Number of successful extensions: 69
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 729294326
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)