Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_A05.2
         (1330 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0594 - 4859492-4859640,4860113-4860189,4861825-4861925           55   1e-07
11_01_0733 - 6068930-6068941,6069259-6069365,6069875-6070112           51   2e-06

>12_01_0594 - 4859492-4859640,4860113-4860189,4861825-4861925
          Length = 108

 Score = 55.2 bits (127), Expect = 1e-07
 Identities = 24/58 (41%), Positives = 35/58 (60%)
 Frame = +2

Query: 197 VACCGSPVPHPAASKMHFRLQASATPALEVLKSGLKALAMVCAHTINLFDKXVKXFNK 370
           VA CG  +PHPA +K++ R+Q +  PA +VLK  L+ L ++C H    FD  V  F +
Sbjct: 37  VAFCGYSIPHPADNKVNIRVQTTGDPAKDVLKDSLQDLMVMCQHVRGTFDTAVTQFRQ 94


>11_01_0733 - 6068930-6068941,6069259-6069365,6069875-6070112
          Length = 118

 Score = 51.2 bits (117), Expect = 2e-06
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
 Frame = +2

Query: 173 SVSXHLSAVACCGSP----VPHPAASKMHFRLQASATPALEVLKSGLKALAMVCAHTINL 340
           S S H S+   C  P    +PHPA +K++ R+Q +  PA++V K GL+ L ++C H    
Sbjct: 46  SASTH-SSQGLCRQPNTPSIPHPADNKVNIRVQTTGDPAIDVFKDGLQDLIVMCQHVRGT 104

Query: 341 FDKXVKXF 364
           FD  V  F
Sbjct: 105 FDNAVVDF 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,426,573
Number of Sequences: 37544
Number of extensions: 263193
Number of successful extensions: 528
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4166995416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)