Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_A05.2
         (1330 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC000889-1|AAH00889.1|  133|Homo sapiens polymerase (RNA) I poly...    46   2e-04
AL136439-1|CAI16933.1|  133|Homo sapiens polymerase (RNA) I poly...    46   2e-04

>BC000889-1|AAH00889.1|  133|Homo sapiens polymerase (RNA) I
           polypeptide D, 16kDa protein.
          Length = 133

 Score = 46.4 bits (105), Expect = 2e-04
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +2

Query: 197 VACCGSPVPHPAASKMHFRLQASAT-PALEVLKSGLKALAMVCAHTINLFDKXVKXF 364
           V  CG    HP+ SK++ R+Q   T PA+E  + GL  L  VC H ++ F+  +K +
Sbjct: 65  VEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKDY 121


>AL136439-1|CAI16933.1|  133|Homo sapiens polymerase (RNA) I
           polypeptide D, 16kDa protein.
          Length = 133

 Score = 46.4 bits (105), Expect = 2e-04
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +2

Query: 197 VACCGSPVPHPAASKMHFRLQASAT-PALEVLKSGLKALAMVCAHTINLFDKXVKXF 364
           V  CG    HP+ SK++ R+Q   T PA+E  + GL  L  VC H ++ F+  +K +
Sbjct: 65  VEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKDY 121


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,467,546
Number of Sequences: 237096
Number of extensions: 1470719
Number of successful extensions: 2203
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2201
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 19266180500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)