Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_A05.2
         (1330 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22179-12|CAA80165.1|  144|Caenorhabditis elegans Hypothetical p...    31   1.4  
Z75552-2|CAA99944.1|  894|Caenorhabditis elegans Hypothetical pr...    29   7.4  
Z75552-1|CAA99941.1|  920|Caenorhabditis elegans Hypothetical pr...    29   7.4  

>Z22179-12|CAA80165.1|  144|Caenorhabditis elegans Hypothetical
           protein F58A4.9 protein.
          Length = 144

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 188 LSAVACCGSPVPHPAASKMHFRLQA-SATPALEVLKSGLKALAMV 319
           +  V  CG  VPHP   K+ FR+Q      ALEVL    +++  +
Sbjct: 83  MDEVEFCGYNVPHPLEDKILFRVQTKDGINALEVLAKAFESVEQI 127


>Z75552-2|CAA99944.1|  894|Caenorhabditis elegans Hypothetical
           protein W04D2.1b protein.
          Length = 894

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 209 GSPVPHPAASKMHFRLQASATPALEVLKSGLKALAMVCAHTINLFDKXVK 358
           G P+P P   KM F   A+   ALE ++S  K + +V      + D  VK
Sbjct: 80  GEPLPKPDRGKMRFHKIANVNKALEYIES--KGVKLVSIGAEEIVDGNVK 127


>Z75552-1|CAA99941.1|  920|Caenorhabditis elegans Hypothetical
           protein W04D2.1a protein.
          Length = 920

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 209 GSPVPHPAASKMHFRLQASATPALEVLKSGLKALAMVCAHTINLFDKXVK 358
           G P+P P   KM F   A+   ALE ++S  K + +V      + D  VK
Sbjct: 80  GEPLPKPDRGKMRFHKIANVNKALEYIES--KGVKLVSIGAEEIVDGNVK 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,053,106
Number of Sequences: 27780
Number of extensions: 223452
Number of successful extensions: 412
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3725590724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)