Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_A04.2
         (1436 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    31   2.0  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    23   2.7  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    23   2.7  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    23   2.8  
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr...    25   5.0  

>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical protein
            E02A10.2 protein.
          Length = 385

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 17/41 (41%), Positives = 17/41 (41%)
 Frame = +1

Query: 1093 GGGXXPPPPPPXXXFFFFLXGGXKKXKXXGGGXGKKXXXGG 1215
            GGG  PPPPPP         GG       GGG G     GG
Sbjct: 106  GGGCAPPPPPPACGGGCGGGGGGCGGGCGGGGGGGCGGGGG 146



 Score = 29.9 bits (64), Expect = 4.6
 Identities = 17/41 (41%), Positives = 17/41 (41%)
 Frame = +1

Query: 1093 GGGXXPPPPPPXXXFFFFLXGGXKKXKXXGGGXGKKXXXGG 1215
            GGG  PPPPPP         GG       GGG G     GG
Sbjct: 49   GGGCAPPPPPPACG--GGCGGGGGGCGGGGGGCGGGGGCGG 87


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoformb protein.
          Length = 1437

 Score = 22.6 bits (46), Expect(3) = 2.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 1099 GXXPPPPPP 1125
            G  PPPPPP
Sbjct: 740  GGPPPPPPP 748



 Score = 22.2 bits (45), Expect(3) = 2.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 1096 GGXXPPPPP 1122
            GG  PPPPP
Sbjct: 724  GGPPPPPPP 732



 Score = 22.2 bits (45), Expect(3) = 2.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 1108 PPPPPPXXXF 1137
            PPPPPP   F
Sbjct: 784  PPPPPPPGMF 793


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoforma protein.
          Length = 1435

 Score = 22.6 bits (46), Expect(3) = 2.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 1099 GXXPPPPPP 1125
            G  PPPPPP
Sbjct: 740  GGPPPPPPP 748



 Score = 22.2 bits (45), Expect(3) = 2.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 1096 GGXXPPPPP 1122
            GG  PPPPP
Sbjct: 724  GGPPPPPPP 732



 Score = 22.2 bits (45), Expect(3) = 2.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 1108 PPPPPPXXXF 1137
            PPPPPP   F
Sbjct: 784  PPPPPPPGMF 793


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 22.6 bits (46), Expect(3) = 2.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 1099 GXXPPPPPP 1125
            G  PPPPPP
Sbjct: 323  GGPPPPPPP 331



 Score = 22.2 bits (45), Expect(3) = 2.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 1096 GGXXPPPPP 1122
            GG  PPPPP
Sbjct: 307  GGPPPPPPP 315



 Score = 22.2 bits (45), Expect(3) = 2.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 1108 PPPPPPXXXF 1137
            PPPPPP   F
Sbjct: 367  PPPPPPPGMF 376


>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical protein
            F15B9.4 protein.
          Length = 1140

 Score = 25.4 bits (53), Expect(2) = 5.0
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 1099 GXXPPPPPPXXXFFFF 1146
            G  PPPPPP    F F
Sbjct: 574  GGPPPPPPPPPPSFMF 589



 Score = 22.6 bits (46), Expect(2) = 5.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 1096 GGXXPPPPPP 1125
            G   PPPPPP
Sbjct: 534  GAPTPPPPPP 543


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,297,668
Number of Sequences: 27780
Number of extensions: 119884
Number of successful extensions: 3720
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2803
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4100231132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)