Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_A03.2
         (1272 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    36   0.016
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    30   0.78 
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    27   5.5  

>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 35.5 bits (78), Expect = 0.016
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 315 KXFLVCTLQXNKCIQVPLDLYFKTGXSIAFLTNGKCNVHLTG 440
           + F++CTL+     Q PL+L    G  + F  +G   +HL+G
Sbjct: 78  REFVLCTLKPGSLYQQPLNLTITPGDEVFFSASGDATIHLSG 119


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 29.9 bits (64), Expect = 0.78
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 321 FLVCTLQXNKCIQVPLDLYFKTGXSIAF-LTNGKCNVHLTG 440
           F +CTL+     Q P+D+ F  G  + F    G   V+L+G
Sbjct: 79  FTLCTLKKGSVYQQPIDIIFSPGEEVFFERVGGDIPVYLSG 119


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 128 HFVCVSRHFRICSHSQHVLGLHHGT 202
           +F C   +     HS H LGL HG+
Sbjct: 447 NFKCAYSYLGFAIHSAHTLGLEHGS 471


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,761,771
Number of Sequences: 5004
Number of extensions: 37339
Number of successful extensions: 60
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 691537944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)