Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_A03.2
         (1272 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0020 + 413723-413738,413867-413934,414849-415144,415275-41...    31   1.9  
05_07_0358 - 29534744-29534974,29535075-29535145,29535894-29535906     30   4.5  

>09_01_0020 +
           413723-413738,413867-413934,414849-415144,415275-415400,
           415484-415566,416514-416628,416755-416847,416963-417021,
           417609-417684,417812-417901,418050-418202,418294-418480,
           418752-418839,419077-419125,419233-419329
          Length = 531

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
 Frame = +3

Query: 180 FWGCIMXPNKRYTQ-VVXQPFHISQAAXDTSTGXNXPCQXXXXXDGKXFLVCTLQXNKCI 356
           FWG  + P + YT         I+QA    S             D +   +C L     +
Sbjct: 4   FWGLELKPGEAYTHHSAPARLRITQAVLG-SCDQGWTTLQCDTNDRETVRLCVLNPGLAV 62

Query: 357 QVPLDLYFKTGXSIAFLTNGKCNVHLTGY 443
              L+L  +   ++    +G+ ++HL+GY
Sbjct: 63  ACHLELELQKDENVLLSVDGQNSIHLSGY 91


>05_07_0358 - 29534744-29534974,29535075-29535145,29535894-29535906
          Length = 104

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
 Frame = +3

Query: 180 FWGCIMXPNKRYT-QVVXQPF-HISQAAXDTSTGXNXPCQXXXXXDGKXFLVCTLQXNKC 353
           FWG  + P +    +   + F H+SQAA   S   +         D +  ++ TL  +K 
Sbjct: 3   FWGLEVKPGQTVKCEPEDERFLHLSQAALGESKKGSDNAVMYVKTDDQKLVIGTLSADKF 62

Query: 354 IQVPLDLYFKTGXSIAFLTNGKCNVHLTGY 443
            Q+  DL F     ++  T+   +V  +GY
Sbjct: 63  PQIQFDLVFDKEFELSH-TSKTASVFFSGY 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,419,931
Number of Sequences: 37544
Number of extensions: 254304
Number of successful extensions: 584
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3945842028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)