Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_A02.2
         (1240 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328...    38   0.016
03_05_0817 - 27939192-27939584,27940806-27941561                       32   1.1  

>05_03_0604 -
           16132173-16132391,16132488-16132556,16132824-16132898,
           16132981-16133113,16133188-16133297,16133360-16133407,
           16133657-16133983,16135006-16135233,16135360-16135689,
           16135780-16136586
          Length = 781

 Score = 37.9 bits (84), Expect = 0.016
 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +1

Query: 358 KLVLSVCSPXFQAMFK--MXPTQHPIVFLKAVSHSALXXLLQFMYQGEVNVKQEEL 519
           KL+LS+ S  F  MF   M  +    VF + V   A   L+QFMY GE+ V  EE+
Sbjct: 367 KLILSLWSMTFDKMFTNGMKESSASNVFFEDVPVEAFFLLIQFMYSGELKVDIEEI 422


>03_05_0817 - 27939192-27939584,27940806-27941561
          Length = 382

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -2

Query: 216 RATTXRGTEPXAVDXDRTGKEEHSGKXRXTXGAPQKPR 103
           RA +   T P A D D + + EH G      GAP  PR
Sbjct: 59  RAASRSTTTPGAPDGDESSRTEHRGDGEEKEGAPLLPR 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,506,411
Number of Sequences: 37544
Number of extensions: 350393
Number of successful extensions: 773
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3817805856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)