Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP14_F_A02.2
         (1240 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      80   5e-17
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          66   8e-13
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              25   1.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   3.1  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 79.8 bits (188), Expect = 5e-17
 Identities = 36/73 (49%), Positives = 51/73 (69%)
 Frame = +1

Query: 349 KHXKLVLSVCSPXFQAMFKMXPTQHPIVFLKAVSHSALXXLLQFMYQGEVNVKQEELASF 528
           K  ++VLS CSP F+ + K  P +HP++ L+ V+ S L  L++F+Y GEVNV Q  L+SF
Sbjct: 44  KAHRVVLSACSPYFRELLKSTPCKHPVIVLQDVAFSDLHALVEFIYHGEVNVHQRSLSSF 103

Query: 529 ISTAEQLQVKGLT 567
           + TAE L+V GLT
Sbjct: 104 LKTAEVLRVSGLT 116


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 65.7 bits (153), Expect = 8e-13
 Identities = 30/73 (41%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
 Frame = +1

Query: 349 KHXKLVLSVCSPXFQAMFKMXPTQHPIVFL-KAVSHSALXXLLQFMYQGEVNVKQEELAS 525
           K  K+VLS CS  FQ +    P +HP + + + V  + L  +++F+Y+GE++V Q EL S
Sbjct: 48  KAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQS 107

Query: 526 FISTAEQLQVKGL 564
            + TA+QL++KGL
Sbjct: 108 LLKTADQLKIKGL 120



 Score = 25.0 bits (52), Expect = 1.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 236 FSLCWHXFPAXLXAGFHGLLSRGALVAVNVGC 331
           + L W+ + + + + FH LL   A V V + C
Sbjct: 11  YCLRWNNYQSNMTSVFHQLLQTEAFVDVTLAC 42


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 469 LLQFMYQGEVNVKQEELASFIS-TAEQLQVKGLTGNQNEE 585
           ++  +Y G VNV+ E + S++    ++  V    GN NE+
Sbjct: 43  IIDEVYNGNVNVEDENVQSYVECMMKKFNVVDENGNFNEK 82


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 587 LSSF*LPVKPLT*SCSAVLINDANSSCLTLTSP 489
           LSS      P+T + S ++ N  NS+C    SP
Sbjct: 323 LSSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSP 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,318
Number of Sequences: 438
Number of extensions: 3594
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42262176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)