Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_P24
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo...    30   0.51 
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    29   1.2  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    28   2.1  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    27   2.7  
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz...    26   8.3  
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual       26   8.3  

>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 569

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +3

Query: 360 GGKVTRGLLASDSSSTPARDSGSDNAEYLGEDENNDNQNSVVAP 491
           G   TRGL  S  SST +R S  + +    ED+ +  Q++VV P
Sbjct: 24  GSSFTRGLKNSTLSSTSSRKSSDEKSRKSSEDKRSP-QSTVVQP 66


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 582 YFHSPELLEGRAEGGEYLQAWQISTTLGKLVTAIKISNMGIFFLT 716
           YF   ++L  + EG   ++ W+I TTL  L       ++ I FLT
Sbjct: 836 YFPMLKVLSSQKEGHAIMERWRIFTTLYHLTELRNRDDLIIIFLT 880


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = +3

Query: 543 IRLPAARLLNHLRYFHSPELLEGRAEGGEYLQAWQISTTLGKLVTAIKISNMGIFFLTIE 722
           I L    + NHL Y  S +++   A  G Y+  W     LG+   A+ + + G+F     
Sbjct: 510 IELGVEYIKNHLSYADSEKMVALGASYGGYMINWIQGHPLGRQFRAL-VCHDGVFNTLNT 568

Query: 723 IFSDNILYAWL-TMAASPW 776
            ++   LY  +     +PW
Sbjct: 569 FYNTEELYFSIHDFGGTPW 587


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 21/74 (28%), Positives = 36/74 (48%)
 Frame = -3

Query: 880 FNDPSHDLTDHTLSINIASRSLPDMVTV*LKPFATQGDAAIVNQAYKILSENISMVKKNM 701
           FN+PSH    ++ S    SR + + VT+   P   + D   +  A  I+ +NI    K  
Sbjct: 192 FNEPSHSHVPNSASSTALSRGMSNSVTLTAPP---EPDEETIPTA--IVIKNIPFSLKKE 246

Query: 700 PMFEILIAVTNFPR 659
            +F++  A+ + PR
Sbjct: 247 VLFKVFTAL-DIPR 259


>SPBC18H10.15 |ppk23||serine/threonine protein kinase
           Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +3

Query: 582 YFHSPELLEGRAEGGEYLQAWQISTTLGKLVT 677
           ++ +PELL G    G+ +  W I     +++T
Sbjct: 238 WYRAPELLLGAPSYGKEIDMWSIGCIFAEMIT 269


>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 364

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/60 (20%), Positives = 32/60 (53%)
 Frame = +3

Query: 312 MEELIANVRKLRAFKLGGKVTRGLLASDSSSTPARDSGSDNAEYLGEDENNDNQNSVVAP 491
           ++E I  +++++  ++ G   R +    + S+ A+    DN   LGE++++ +  + + P
Sbjct: 254 IDEAIDRLKEVKRRRIEGFERRKMRREQNLSSDAKVEDQDNDSMLGENKSSVSTETALKP 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,643,995
Number of Sequences: 5004
Number of extensions: 75370
Number of successful extensions: 198
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)