Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_P22
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...    50   6e-07
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    27   2.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.7  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   4.7  
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|...    27   4.7  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   8.2  

>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 49.6 bits (113), Expect = 6e-07
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
 Frame = +3

Query: 555 LSRAPTIVGEQNTQ--PLLFEGTGLIVDKDNSLVLPILSADSTAYSYNPK--SQVKEYPH 722
           +S  P I+ ++     P+L++G G  +   N    PIL  + T+Y YN K  ++V + P 
Sbjct: 150 ISENPYIISDETRAAGPILYKGIGHYLGP-NPQTQPILRGNPTSYIYNTKTEAEVSKNPW 208

Query: 723 AVGRKTVLIAALQARNNARIVFSGSLXFFSDE 818
           A G +  L++ LQ+    R+  SGS+    DE
Sbjct: 209 AAGTQLFLVSVLQSSTGERVGLSGSIDMLKDE 240



 Score = 49.2 bits (112), Expect = 8e-07
 Identities = 25/103 (24%), Positives = 46/103 (44%)
 Frame = +2

Query: 194 HSQFFKSLQERGYGLTFKLADDANLVLSKYGEYLYKNLIVFAPSVLEFGGQVDSEAITKF 373
           +S F +SL +R + +      D +  L +YGE LY NLI+ +      G     +++ +F
Sbjct: 35  YSTFLQSLTDRDFDVKTSYIKDESAKLFEYGERLYDNLILLSSQSKSLGPVFSPKSLLEF 94

Query: 374 IDDXXXXXXXXXXXXXDVYREIASECGFEMDEESAAVIDHFNY 502
           +               +  RE+  +    + E  + V+DHFN+
Sbjct: 95  VQSGGNLFVVAGSQLPEGIRELGRQLDMFLAERQSVVVDHFNH 137


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -2

Query: 782 NTSIVSCLQSCNQYCLTANCMGVLFHLTLRVVTVGSRI 669
           ++++V C+ +  + C   NC  +++H+       G RI
Sbjct: 819 SSTVVDCVSAVREACSGVNCHDLIYHVFSFAAEFGQRI 856


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 408  LPAIRRFPPSSMNLVMASLSTCPPNSST 325
            +P++ + PPSS+    A  ST PP+ S+
Sbjct: 1498 IPSVAQQPPSSVAPATAPSSTLPPSQSS 1525


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 23/101 (22%), Positives = 46/101 (45%)
 Frame = -1

Query: 540 TTMRVWSPSSVTS*LKWSMTAADSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNLVM 361
           T+  + S S+ +S L  S T + +S+     + + SL ++ A+          SS+N   
Sbjct: 145 TSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTT 204

Query: 360 ASLSTCPPNSSTEGANTMRFLYKYSPYFDRTRFASSASLNV 238
           ++ +T    SST  +N+       S   + T  A++ S ++
Sbjct: 205 SATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSI 245


>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +3

Query: 726 VGRKTVLIAALQARNNARI-VFSGS 797
           +G KT ++AAL A  N+R+ VF+GS
Sbjct: 62  IGDKTFIVAALLAFENSRLTVFAGS 86


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 15/58 (25%), Positives = 31/58 (53%)
 Frame = -1

Query: 483 TAADSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNSSTEGANT 310
           +   SSS S+P S + +  TSP+++  +      SS +   +S S+   +SS+  +++
Sbjct: 134 STTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,338,944
Number of Sequences: 5004
Number of extensions: 66287
Number of successful extensions: 221
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)