Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_P21
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    28   1.5  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    27   4.7  

>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +1

Query: 283 IILCHACTVRVIIIAAIKFKSGCMISKMKEVKWCLVIL*KYMLVSTCKYYLDVNYSLYRF 462
           ++L H      I +   KF  G  +SK +   WC ++   Y   + C Y + +N ++  F
Sbjct: 650 LLLLHGLLSVDISLKQKKFVPGMKLSKREIDGWCSLVFEAYQKWNRCYYSIFLNNNILPF 709


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = -3

Query: 377 FTSFIFEIIQPDLNFIAAIIITLTVHAWQRIILSWTYKYNL*WFSLCSPEYLSTHNSYQK 198
           F S++   ++    F+  + ++ TV AWQ  + +WT   N    S+C      +  + ++
Sbjct: 428 FLSYLVHSLKQHGPFLIVVPLS-TVPAWQETLANWTPDLN----SICYTGNTESRANIRE 482

Query: 197 SNFYFS 180
             FY S
Sbjct: 483 YEFYLS 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,826,433
Number of Sequences: 5004
Number of extensions: 55868
Number of successful extensions: 110
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)