Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_P21
         (883 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    25   1.2  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   1.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.5  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   6.5  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   6.5  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   6.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   6.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   8.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   8.6  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 532 KLYQTILNRLIPSSNNLSYGR*NKNDISYNLHLDNIY 422
           K+  ++ NR I ++NN  Y   N N+ +YN +   +Y
Sbjct: 80  KIISSLSNRTIHNNNNYKY---NYNNNNYNNNCKKLY 113


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 532 KLYQTILNRLIPSSNNLSYGR*NKNDISYNLHLDNIYK 419
           K+  ++ N+ I ++NN +    N N  +YN +  N YK
Sbjct: 313 KIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNNYNNYK 350


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 531 NYIRRFLIV*SHLPTIYL 478
           +YIRR+L V  + PT Y+
Sbjct: 444 DYIRRYLPVLKNFPTRYI 461


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 532 KLYQTILNRLIPSSNNLSYGR*NKNDISYNLHLDNIY 422
           K+  ++ N+ I ++NN  Y   N N   YN +   +Y
Sbjct: 80  KIISSLSNKTIHNNNNYKYNYNNNN---YNNNCKKLY 113


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 532 KLYQTILNRLIPSSNNLSYGR*NKNDISYNLHLDNIY 422
           K+  ++ N+ I ++NN  Y   N N   YN +   +Y
Sbjct: 80  KIISSLSNKTIHNNNNYKYNYNNNN---YNNNCKKLY 113


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 532 KLYQTILNRLIPSSNNLSYGR*NKNDISYNLHLDNIY 422
           K+  ++ N+ I ++NN  Y   N N   YN +   +Y
Sbjct: 80  KIISSLSNKTIHNNNNYKYNYNNNN---YNNNCKKLY 113


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -1

Query: 532 KLYQTILNRLIPSSNNLSYG--R*NKNDISYNLHLDN 428
           K+  ++ N+ I ++NN  Y     N N+ +YN + +N
Sbjct: 313 KIISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNYNN 349


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 348 LYDFKDEGSEMVFSHLV 398
           LYDF  EG  M+F  ++
Sbjct: 655 LYDFNYEGPNMLFKDIL 671


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 348 LYDFKDEGSEMVFSHLV 398
           LYDF  EG  M+F  ++
Sbjct: 655 LYDFNYEGPNMLFKDIL 671


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,832
Number of Sequences: 438
Number of extensions: 3969
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)