Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_P20
(941 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 73 4e-14
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 49 1e-06
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 46 1e-05
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 45 2e-05
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 32 0.10
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 32 0.10
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 31 0.31
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 30 0.41
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 30 0.54
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 28 1.7
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3... 27 2.9
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 27 5.1
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 6.7
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2... 26 6.7
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 26 6.7
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 8.8
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 73.3 bits (172), Expect = 4e-14
Identities = 32/71 (45%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = +3
Query: 444 PSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNC--PDGTKTCYVCGKPGHIS 617
P CYNC + GH AR C +G CYNCN++GH + C P KTCY CG GH+
Sbjct: 17 PRCYNCGENGHQARECTKGS------ICYNCNQTGHKASECTEPQQEKTCYACGTAGHLV 70
Query: 618 RXCDXARNXPQ 650
R C + N Q
Sbjct: 71 RDCPSSPNPRQ 81
Score = 71.7 bits (168), Expect = 1e-13
Identities = 40/117 (34%), Positives = 50/117 (42%), Gaps = 12/117 (10%)
Frame = +3
Query: 321 CFKCNRTGHFARDCKEEG*PLLQMXXXXXXXXXXXXXXXTKP----SCYNCNKTGHIARN 488
C+ CN+TGH A +C E P CY C + GHIAR+
Sbjct: 38 CYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARD 97
Query: 489 CPEGGRES--------ATXTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRXCDXA 635
C G++S + CY C GH +R+C G K CY CGK GH S C A
Sbjct: 98 CRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVK-CYSCGKIGHRSFECQQA 153
Score = 68.5 bits (160), Expect = 1e-12
Identities = 36/104 (34%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Frame = +3
Query: 321 CFKCNRTGHFARDCKEEG*PLLQMXXXXXXXXXXXXXXXTKPSCYNCNKTGHIARNCPEG 500
C+KC R GH ARDC+ G + +CY C GH AR+C G
Sbjct: 85 CYKCGRVGHIARDCRTNG----------QQSGGRFGGHRSNMNCYACGSYGHQARDCTMG 134
Query: 501 GRESATXTCYNCNKSGHISRNCPDGT--KTCYVCGKPGHISRXC 626
+ CY+C K GH S C + + CY C +PGHI+ C
Sbjct: 135 VK------CYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 62.9 bits (146), Expect = 6e-11
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 13/115 (11%)
Frame = +3
Query: 321 CFKCNRTGHFARDCKEEG*PLLQMXXXXXXXXXXXXXXXTKPSCYNCNKTGHIARNCPEG 500
C+ C GH AR+C + + + +CY C GH+ R+CP
Sbjct: 19 CYNCGENGHQARECTKGS--ICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSS 76
Query: 501 GRESATXTCYNCNKSGHISRNC-PDGTKT------------CYVCGKPGHISRXC 626
CY C + GHI+R+C +G ++ CY CG GH +R C
Sbjct: 77 PNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDC 131
Score = 36.7 bits (81), Expect = 0.005
Identities = 21/71 (29%), Positives = 30/71 (42%)
Frame = +1
Query: 217 SVCYKCNRTGHFAREMHAGGRGVAGFRFQXXXXXXXXXXXXQDTLRGIARKKADRCYRCN 396
S+CY CN+TGH A E + + +D ++ CY+C
Sbjct: 36 SICYNCNQTGHKASEC------TEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCG 89
Query: 397 GTGHIAREVRT 429
GHIAR+ RT
Sbjct: 90 RVGHIARDCRT 100
Score = 34.7 bits (76), Expect = 0.019
Identities = 20/72 (27%), Positives = 26/72 (36%)
Frame = +1
Query: 193 SKPIAMSSSVCYKCNRTGHFAREMHAGGRGVAGFRFQXXXXXXXXXXXXQDTLRGIARKK 372
S P + CYKC R GH AR+ G+ +G RF +
Sbjct: 75 SSPNPRQGAECYKCGRVGHIARDCRTNGQ-QSGGRFGGHRSNMNCYACGSYGHQARDCTM 133
Query: 373 ADRCYRCNGTGH 408
+CY C GH
Sbjct: 134 GVKCYSCGKIGH 145
Score = 27.9 bits (59), Expect = 2.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 184 QAFSKPIAMSSSVCYKCNRTGHFA 255
++F A +CYKCN+ GH A
Sbjct: 146 RSFECQQASDGQLCYKCNQPGHIA 169
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 48.8 bits (111), Expect = 1e-06
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Frame = +3
Query: 450 CYNCNKTGHIARNCPEGGRESATXTCYNCNK-SGHISRNCPDGTKTCYVCGKPGHISRXC 626
C+NC GHI+++CP C C HIS CP TK C CG GHI+ C
Sbjct: 89 CHNCKGNGHISKDCPH-------VLCTTCGAIDDHISVRCP-WTKKCMNCGLLGHIAARC 140
Query: 627 DXARNXPQPPCXPLQSTMYIINXXP 701
R C + + + P
Sbjct: 141 SEPRKRGPRVCRTCHTDTHTSSTCP 165
Score = 43.6 bits (98), Expect = 4e-05
Identities = 25/83 (30%), Positives = 30/83 (36%)
Frame = +3
Query: 321 CFKCNRTGHFARDCKEEG*PLLQMXXXXXXXXXXXXXXXTKPSCYNCNKTGHIARNCPEG 500
C C GH ++DC +L TK C NC GHIA C E
Sbjct: 89 CHNCKGNGHISKDCPH----VLCTTCGAIDDHISVRCPWTK-KCMNCGLLGHIAARCSE- 142
Query: 501 GRESATXTCYNCNKSGHISRNCP 569
R+ C C+ H S CP
Sbjct: 143 PRKRGPRVCRTCHTDTHTSSTCP 165
Score = 37.9 bits (84), Expect = 0.002
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 498 GGRESATXTCYNCNKSGHISRNCPDGTKTCYVCGK-PGHISRXC 626
G S + C+NC +GHIS++CP C CG HIS C
Sbjct: 80 GSDPSESIVCHNCKGNGHISKDCPH--VLCTTCGAIDDHISVRC 121
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 45.6 bits (103), Expect = 1e-05
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Frame = +3
Query: 450 CYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNC----PDGTKTCYVCGKPGHIS 617
C+ C + GHI ++CPE + C+ C H C P C++C + GH+S
Sbjct: 79 CFACRQQGHIVQDCPEA--KDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLS 136
Query: 618 RXCD 629
C+
Sbjct: 137 GQCE 140
Score = 35.5 bits (78), Expect = 0.011
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 6/95 (6%)
Frame = +3
Query: 315 RXCFKCNRTGHFARDCKEEG*PLLQMXXXXXXXXXXXXXXXTKP----SCYNCNKTGHIA 482
+ CF C + GH +DC E + P C+ C++ GH++
Sbjct: 77 KFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLS 136
Query: 483 RNCPEG--GRESATXTCYNCNKSGHISRNCPDGTK 581
C + G C C+ H++++C K
Sbjct: 137 GQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNK 171
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 44.8 bits (101), Expect = 2e-05
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 450 CYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCP 569
C NC GH +CPE + C +C GHI+R+CP
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 36.3 bits (80), Expect = 0.006
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Frame = +3
Query: 504 RESATXTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRXCDXARNXPQPP 656
R+ C NC GH +CP+ C CG GHI+R C QPP
Sbjct: 304 RDDENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCPV--RDQQPP 357
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 32.3 bits (70), Expect = 0.10
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +3
Query: 549 HISRNCPDGTKTCYVCGKPGHISRXC 626
H + CP TCY CGK H R C
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 32.3 bits (70), Expect = 0.10
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +3
Query: 549 HISRNCPDGTKTCYVCGKPGHISRXC 626
H + CP TCY CGK H R C
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 30.7 bits (66), Expect = 0.31
Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Frame = +3
Query: 516 TXTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRXCDXARNXPQPPCXPL-QSTMYIIN 692
T TC+ CNK R+ T TC +C HI D P P Y I
Sbjct: 26 TVTCFYCNKKKEKIRD-GTSTWTCSICEATNHIDEKGDILDYRPPTPTQDKGVGPFYAIR 84
Query: 693 XXPRTXKQRTP 725
P + ++P
Sbjct: 85 DFPSSSSFQSP 95
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 30.3 bits (65), Expect = 0.41
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = +3
Query: 441 KPSCYNCNKTGHIARNCPEGGRESATXTCYNCN-KSGHISRNCPDGTKTCYVCG 599
KP+ N + N + T TC NC ++ + R PDG C CG
Sbjct: 607 KPTVSNAAEDKKGDANTRRANATNPTPTCTNCQTRTTPLWRRSPDGQPLCNACG 660
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 29.9 bits (64), Expect = 0.54
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = +3
Query: 486 NCPEGGRESATXTCYN----CNKSGHISRNCPDGTKTCYVC 596
+CP+G E T C+N C +G+IS P VC
Sbjct: 66 DCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVDDTVC 106
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 28.3 bits (60), Expect = 1.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 501 GRESATXTCYNCNKSGHISRNCPDGTKTCYVCGKP 605
GR+ T C NC + GH+ N K C + G+P
Sbjct: 939 GRKPTTRKCSNCGQVGHMKTN-----KICPLFGRP 968
>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 27.5 bits (58), Expect = 2.9
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = -3
Query: 453 NTTASSG--LCAHFARYVPRAVTSVATVSLLPCNPSQSVLCGCT*STXSRCRLKPESRDT 280
NT AS L +A +P +SVA V P S +L + + SR + KP++R +
Sbjct: 257 NTRASHSPSLLEPYAHSLP---SSVAPVGAYP-EKSSYLLSNSSNDSASR-KEKPKARAS 311
Query: 279 TPPCVHFAR 253
TPP ++F+R
Sbjct: 312 TPPPLNFSR 320
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 162 LH*CLKCSSIFKTDRN 209
LH C+ C SIF DRN
Sbjct: 425 LHWCINCRSIFSGDRN 440
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +3
Query: 525 CYNCNKSGHISRNCPDGTKTCYVCGKP 605
CY C + GH + CP Y GKP
Sbjct: 185 CYRCGQKGHWIQACPTNADPNY-DGKP 210
>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 26.2 bits (55), Expect = 6.7
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Frame = +1
Query: 205 AMSSSVCYKCNRTG--HFARE---MHAGGRGVAGFRFQXXXXXXXXXXXXQDTL--RGIA 363
A +++C +C G FA+E + G+GV DT +G++
Sbjct: 141 ATRNTLCPRCQGRGGKRFAKEKPCLSCDGKGVKQHLKHVGPHHVTNSQVICDTCNGKGVS 200
Query: 364 RKKADRCYRCNGTGHIARE 420
+ DRC C G+G + +
Sbjct: 201 FRGKDRCKHCKGSGTVPEQ 219
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 26.2 bits (55), Expect = 6.7
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -3
Query: 390 SVATVSLLPCNPSQSVLC 337
S+ T+ + PCNP+ ++LC
Sbjct: 395 SLTTLIVKPCNPASTILC 412
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 8.8
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 534 SYSRXASQTPAPPRDSSVRCGPSCCSCNTTASS 436
S S +S TP P SS+ P+ S TTA S
Sbjct: 843 SSSTTSSITPTPTTTSSITPTPTTTSTTTTAQS 875
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,538
Number of Sequences: 5004
Number of extensions: 40309
Number of successful extensions: 194
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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