Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_P20
(941 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 76 3e-14
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 58 1e-08
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 58 1e-08
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 58 1e-08
U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical pr... 55 8e-08
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 54 1e-07
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 54 1e-07
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 54 1e-07
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 48 7e-06
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 48 7e-06
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 43 3e-04
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 43 3e-04
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 43 3e-04
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 43 3e-04
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 42 6e-04
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 42 6e-04
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 38 0.008
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 38 0.008
AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical ... 37 0.024
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 36 0.032
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 36 0.032
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 36 0.032
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 36 0.032
L12018-4|AAK68342.1| 456|Caenorhabditis elegans Dnaj domain (pr... 33 0.39
L12018-3|AAK68343.1| 446|Caenorhabditis elegans Dnaj domain (pr... 33 0.39
Z79603-8|CAH04750.1| 137|Caenorhabditis elegans Hypothetical pr... 32 0.52
AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical ... 32 0.52
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 31 0.90
Z81540-2|CAB04403.1| 190|Caenorhabditis elegans Hypothetical pr... 31 1.6
Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical p... 31 1.6
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical pr... 30 2.1
Z75545-3|CAA99886.1| 922|Caenorhabditis elegans Hypothetical pr... 30 2.8
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ... 30 2.8
Z81540-1|CAB04402.1| 186|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z81071-6|CAB03010.1| 464|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical pr... 29 3.6
AC084159-15|AAK39353.1| 418|Caenorhabditis elegans Hypothetical... 29 3.6
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ... 29 4.8
Z81532-7|CAJ34990.1| 363|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr... 28 8.4
Z54216-1|CAA90943.1| 308|Caenorhabditis elegans Hypothetical pr... 28 8.4
AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical ... 28 8.4
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 76.2 bits (179), Expect = 3e-14
Identities = 47/131 (35%), Positives = 55/131 (41%), Gaps = 19/131 (14%)
Frame = +3
Query: 306 GNVRXCFKCNRTGHFARDCKEEG*PLLQMXXXXXXXXXXXXXXXTKPSCYNCNKTGHIAR 485
G C+ C TGHF+RDC + G SCYNC GH +R
Sbjct: 32 GGGSTCYNCQETGHFSRDCPKGG-----------SGGGQRGGGGGGGSCYNCGGRGHYSR 80
Query: 486 NCP----EGG-----------RESATXTCYNCNKSGHISRNCPDG----TKTCYVCGKPG 608
+CP EGG R CYNC +SGHISR C + K CY C + G
Sbjct: 81 DCPSARSEGGSGGYGGRGGEGRSFGGQKCYNCGRSGHISRECTESGSAEEKRCYQCQETG 140
Query: 609 HISRXCDXARN 641
HISR C N
Sbjct: 141 HISRDCPSQTN 151
Score = 74.1 bits (174), Expect = 1e-13
Identities = 46/156 (29%), Positives = 63/156 (40%), Gaps = 27/156 (17%)
Frame = +3
Query: 315 RXCFKCNRTGHFARDCKEEG*PLLQMXXXXXXXXXXXXXXXTKPSCYNCNKTGHIARNCP 494
R C+KC + GH +R+C +CYNC +TGH +R+CP
Sbjct: 4 RNCYKCQQPGHISRNCPN------------GESDGGRRGGGGGSTCYNCQETGHFSRDCP 51
Query: 495 EGGRESAT-------XTCYNCNKSGHISRNCPD--------------------GTKTCYV 593
+GG +CYNC GH SR+CP G + CY
Sbjct: 52 KGGSGGGQRGGGGGGGSCYNCGGRGHYSRDCPSARSEGGSGGYGGRGGEGRSFGGQKCYN 111
Query: 594 CGKPGHISRXCDXARNXPQPPCXPLQSTMYIINXXP 701
CG+ GHISR C + + + C Q T +I P
Sbjct: 112 CGRSGHISRECTESGSAEEKRCYQCQETGHISRDCP 147
Score = 35.5 bits (78), Expect = 0.056
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Frame = +1
Query: 223 CYKCNRTGHFAREMHA----------GGRGVAGFRF---QXXXXXXXXXXXXQDTLRGIA 363
CY C GH++R+ + GGRG G F + + T G A
Sbjct: 69 CYNCGGRGHYSRDCPSARSEGGSGGYGGRGGEGRSFGGQKCYNCGRSGHISRECTESGSA 128
Query: 364 RKKADRCYRCNGTGHIARE 420
+K RCY+C TGHI+R+
Sbjct: 129 EEK--RCYQCQETGHISRD 145
Score = 34.3 bits (75), Expect = 0.13
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 217 SVCYKCNRTGHFAREMHAGGRG 282
S CY C TGHF+R+ GG G
Sbjct: 35 STCYNCQETGHFSRDCPKGGSG 56
Score = 28.7 bits (61), Expect = 6.4
Identities = 23/81 (28%), Positives = 29/81 (35%), Gaps = 10/81 (12%)
Frame = +1
Query: 208 MSSSVCYKCNRTGHFAR-----EMHAGGRGVAGFR--FQXXXXXXXXXXXXQDTLRGIAR 366
MS CYKC + GH +R E G RG G + + G R
Sbjct: 1 MSDRNCYKCQQPGHISRNCPNGESDGGRRGGGGGSTCYNCQETGHFSRDCPKGGSGGGQR 60
Query: 367 ---KKADRCYRCNGTGHIARE 420
CY C G GH +R+
Sbjct: 61 GGGGGGGSCYNCGGRGHYSRD 81
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 57.6 bits (133), Expect = 1e-08
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = +3
Query: 447 SCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTK 581
+C+NC + GH + +CPE +E CYNC + GH SR+CP+ K
Sbjct: 258 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 302
Score = 57.6 bits (133), Expect = 1e-08
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = +3
Query: 447 SCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTK 581
+C+NC + GH + +CPE +E CYNC + GH SR+CP+ K
Sbjct: 372 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 416
Score = 50.4 bits (115), Expect = 2e-06
Identities = 31/107 (28%), Positives = 40/107 (37%), Gaps = 3/107 (2%)
Frame = +3
Query: 315 RXCFKCNRTGHFARDCKEEG*PLLQMXXXXXXXXXXXXXXXTKPSCYNCNKTGHIARNCP 494
R C+ C + GH +RDC EE P S + G
Sbjct: 396 RVCYNCQQPGHNSRDCPEERKP--------------REGRNGFTSGFGGGNDGGFGGGNA 441
Query: 495 EG---GRESATXTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRXC 626
EG E C+NC GH S CP+ + C+ CG+ GH S C
Sbjct: 442 EGFGNNEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 488
Score = 45.6 bits (103), Expect = 5e-05
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +3
Query: 504 RESATXTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRXCDXAR 638
R C+NC + GH S +CP+ K CY C +PGH SR C R
Sbjct: 252 RGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 301
Score = 45.6 bits (103), Expect = 5e-05
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +3
Query: 504 RESATXTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRXCDXAR 638
R C+NC + GH S +CP+ K CY C +PGH SR C R
Sbjct: 366 RGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 415
Score = 44.0 bits (99), Expect = 2e-04
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 450 CYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTK 581
C+NC GH + CPE R C+NC + GH S CP+ K
Sbjct: 455 CFNCKGEGHRSAECPEPPRG-----CFNCGEQGHRSNECPNPAK 493
Score = 32.7 bits (71), Expect = 0.39
Identities = 32/137 (23%), Positives = 45/137 (32%), Gaps = 2/137 (1%)
Frame = +3
Query: 315 RXCFKCNRTGHFARDCKEEG*PLLQMXXXXXXXXXXXXXXXTKPSCYNCNKTGHIARNCP 494
R C+ C + GH +RDC EE P + G + N
Sbjct: 282 RVCYNCQQPGHNSRDCPEERKPREGRNGFTGGSSGFGGGNGGGTGFDSGLTNGFGSGNNG 341
Query: 495 EGGRES-ATXTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRXCDXARNXPQP-PCXPL 668
E G S N SG ++ + C+ C +PGH S C + +P C
Sbjct: 342 ESGFGSGGFGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNC 401
Query: 669 QSTMYIINXXPRTXKQR 719
Q + P K R
Sbjct: 402 QQPGHNSRDCPEERKPR 418
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 57.6 bits (133), Expect = 1e-08
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = +3
Query: 447 SCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTK 581
+C+NC + GH + +CPE +E CYNC + GH SR+CP+ K
Sbjct: 258 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 302
Score = 57.6 bits (133), Expect = 1e-08
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = +3
Query: 447 SCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTK 581
+C+NC + GH + +CPE +E CYNC + GH SR+CP+ K
Sbjct: 372 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 416
Score = 50.4 bits (115), Expect = 2e-06
Identities = 31/107 (28%), Positives = 40/107 (37%), Gaps = 3/107 (2%)
Frame = +3
Query: 315 RXCFKCNRTGHFARDCKEEG*PLLQMXXXXXXXXXXXXXXXTKPSCYNCNKTGHIARNCP 494
R C+ C + GH +RDC EE P S + G
Sbjct: 396 RVCYNCQQPGHNSRDCPEERKP--------------REGRNGFTSGFGGGNDGGFGGGNA 441
Query: 495 EG---GRESATXTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRXC 626
EG E C+NC GH S CP+ + C+ CG+ GH S C
Sbjct: 442 EGFGNNEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 488
Score = 45.6 bits (103), Expect = 5e-05
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +3
Query: 504 RESATXTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRXCDXAR 638
R C+NC + GH S +CP+ K CY C +PGH SR C R
Sbjct: 252 RGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 301
Score = 45.6 bits (103), Expect = 5e-05
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +3
Query: 504 RESATXTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRXCDXAR 638
R C+NC + GH S +CP+ K CY C +PGH SR C R
Sbjct: 366 RGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 415
Score = 44.0 bits (99), Expect = 2e-04
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 450 CYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTK 581
C+NC GH + CPE R C+NC + GH S CP+ K
Sbjct: 455 CFNCKGEGHRSAECPEPPRG-----CFNCGEQGHRSNECPNPAK 493
Score = 32.7 bits (71), Expect = 0.39
Identities = 32/137 (23%), Positives = 45/137 (32%), Gaps = 2/137 (1%)
Frame = +3
Query: 315 RXCFKCNRTGHFARDCKEEG*PLLQMXXXXXXXXXXXXXXXTKPSCYNCNKTGHIARNCP 494
R C+ C + GH +RDC EE P + G + N
Sbjct: 282 RVCYNCQQPGHNSRDCPEERKPREGRNGFTGGSSGFGGGNGGGTGFDSGLTNGFGSGNNG 341
Query: 495 EGGRES-ATXTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRXCDXARNXPQP-PCXPL 668
E G S N SG ++ + C+ C +PGH S C + +P C
Sbjct: 342 ESGFGSGGFGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNC 401
Query: 669 QSTMYIINXXPRTXKQR 719
Q + P K R
Sbjct: 402 QQPGHNSRDCPEERKPR 418
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 57.6 bits (133), Expect = 1e-08
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = +3
Query: 447 SCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTK 581
+C+NC + GH + +CPE +E CYNC + GH SR+CP+ K
Sbjct: 258 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 302
Score = 57.6 bits (133), Expect = 1e-08
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = +3
Query: 447 SCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTK 581
+C+NC + GH + +CPE +E CYNC + GH SR+CP+ K
Sbjct: 372 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERK 416
Score = 50.4 bits (115), Expect = 2e-06
Identities = 31/107 (28%), Positives = 40/107 (37%), Gaps = 3/107 (2%)
Frame = +3
Query: 315 RXCFKCNRTGHFARDCKEEG*PLLQMXXXXXXXXXXXXXXXTKPSCYNCNKTGHIARNCP 494
R C+ C + GH +RDC EE P S + G
Sbjct: 396 RVCYNCQQPGHNSRDCPEERKP--------------REGRNGFTSGFGGGNDGGFGGGNA 441
Query: 495 EG---GRESATXTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRXC 626
EG E C+NC GH S CP+ + C+ CG+ GH S C
Sbjct: 442 EGFGNNEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 488
Score = 45.6 bits (103), Expect = 5e-05
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +3
Query: 504 RESATXTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRXCDXAR 638
R C+NC + GH S +CP+ K CY C +PGH SR C R
Sbjct: 252 RGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 301
Score = 45.6 bits (103), Expect = 5e-05
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +3
Query: 504 RESATXTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRXCDXAR 638
R C+NC + GH S +CP+ K CY C +PGH SR C R
Sbjct: 366 RGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEER 415
Score = 44.0 bits (99), Expect = 2e-04
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 450 CYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTK 581
C+NC GH + CPE R C+NC + GH S CP+ K
Sbjct: 455 CFNCKGEGHRSAECPEPPRG-----CFNCGEQGHRSNECPNPAK 493
Score = 32.7 bits (71), Expect = 0.39
Identities = 32/137 (23%), Positives = 45/137 (32%), Gaps = 2/137 (1%)
Frame = +3
Query: 315 RXCFKCNRTGHFARDCKEEG*PLLQMXXXXXXXXXXXXXXXTKPSCYNCNKTGHIARNCP 494
R C+ C + GH +RDC EE P + G + N
Sbjct: 282 RVCYNCQQPGHNSRDCPEERKPREGRNGFTGGSSGFGGGNGGGTGFDSGLTNGFGSGNNG 341
Query: 495 EGGRES-ATXTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRXCDXARNXPQP-PCXPL 668
E G S N SG ++ + C+ C +PGH S C + +P C
Sbjct: 342 ESGFGSGGFGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNC 401
Query: 669 QSTMYIINXXPRTXKQR 719
Q + P K R
Sbjct: 402 QQPGHNSRDCPEERKPR 418
>U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical
protein F07E5.5 protein.
Length = 384
Score = 54.8 bits (126), Expect = 8e-08
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Frame = +3
Query: 438 TKPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNC-PDGTK-----TCYVCG 599
T +C++C + GH +CP+ S+ C+ C H C G K TC+VC
Sbjct: 227 TGSACFHCREPGHRLADCPKRNSSSSDGVCFKCGSMEHSIHECKKKGVKGFPYATCFVCK 286
Query: 600 KPGHISRXCDXARNXPQP 653
+ GHISR C N P
Sbjct: 287 QVGHISRDCHQNVNGVYP 304
Score = 44.8 bits (101), Expect = 9e-05
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Frame = +3
Query: 450 CYNCNKTGHIARNCPEGGRESATX-TCYNCNKSGHISRNC--------PDGTKTCYVCGK 602
C+ C H C + G + TC+ C + GHISR+C PDG C VCG
Sbjct: 256 CFKCGSMEHSIHECKKKGVKGFPYATCFVCKQVGHISRDCHQNVNGVYPDG-GCCNVCGA 314
Query: 603 PGHISRXC 626
H+ R C
Sbjct: 315 NTHLRRDC 322
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 54.4 bits (125), Expect = 1e-07
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = +3
Query: 447 SCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTK 581
+C+NC + GH + +CPE +E CYNC + GH SR C + K
Sbjct: 159 NCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERK 203
Score = 53.6 bits (123), Expect = 2e-07
Identities = 30/104 (28%), Positives = 39/104 (37%)
Frame = +3
Query: 315 RXCFKCNRTGHFARDCKEEG*PLLQMXXXXXXXXXXXXXXXTKPSCYNCNKTGHIARNCP 494
R C+ C + GH +R+C EE P N G
Sbjct: 183 RVCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGN---------NGGNDGFGGDGGF 233
Query: 495 EGGRESATXTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRXC 626
GG E C+NC GH S CP+ + C+ CG+ GH S C
Sbjct: 234 GGGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 277
Score = 46.4 bits (105), Expect = 3e-05
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Frame = +3
Query: 498 GGRESATXTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRXCDXAR 638
GG E C+NC + GH S +CP+ K CY C +PGH SR C R
Sbjct: 152 GGGER-NNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEER 202
Score = 44.0 bits (99), Expect = 2e-04
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 450 CYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTK 581
C+NC GH + CPE R C+NC + GH S CP+ K
Sbjct: 244 CFNCKGEGHRSAECPEPPRG-----CFNCGEQGHRSNECPNPAK 282
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 54.4 bits (125), Expect = 1e-07
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = +3
Query: 447 SCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTK 581
+C+NC + GH + +CPE +E CYNC + GH SR C + K
Sbjct: 159 NCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERK 203
Score = 53.6 bits (123), Expect = 2e-07
Identities = 30/104 (28%), Positives = 39/104 (37%)
Frame = +3
Query: 315 RXCFKCNRTGHFARDCKEEG*PLLQMXXXXXXXXXXXXXXXTKPSCYNCNKTGHIARNCP 494
R C+ C + GH +R+C EE P N G
Sbjct: 183 RVCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGN---------NGGNDGFGGDGGF 233
Query: 495 EGGRESATXTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRXC 626
GG E C+NC GH S CP+ + C+ CG+ GH S C
Sbjct: 234 GGGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 277
Score = 46.4 bits (105), Expect = 3e-05
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Frame = +3
Query: 498 GGRESATXTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRXCDXAR 638
GG E C+NC + GH S +CP+ K CY C +PGH SR C R
Sbjct: 152 GGGER-NNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEER 202
Score = 44.0 bits (99), Expect = 2e-04
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 450 CYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTK 581
C+NC GH + CPE R C+NC + GH S CP+ K
Sbjct: 244 CFNCKGEGHRSAECPEPPRG-----CFNCGEQGHRSNECPNPAK 282
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 54.4 bits (125), Expect = 1e-07
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = +3
Query: 447 SCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTK 581
+C+NC + GH + +CPE +E CYNC + GH SR C + K
Sbjct: 159 NCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERK 203
Score = 53.6 bits (123), Expect = 2e-07
Identities = 30/104 (28%), Positives = 39/104 (37%)
Frame = +3
Query: 315 RXCFKCNRTGHFARDCKEEG*PLLQMXXXXXXXXXXXXXXXTKPSCYNCNKTGHIARNCP 494
R C+ C + GH +R+C EE P N G
Sbjct: 183 RVCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGN---------NGGNDGFGGDGGF 233
Query: 495 EGGRESATXTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRXC 626
GG E C+NC GH S CP+ + C+ CG+ GH S C
Sbjct: 234 GGGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNEC 277
Score = 46.4 bits (105), Expect = 3e-05
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Frame = +3
Query: 498 GGRESATXTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRXCDXAR 638
GG E C+NC + GH S +CP+ K CY C +PGH SR C R
Sbjct: 152 GGGER-NNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEER 202
Score = 44.0 bits (99), Expect = 2e-04
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 450 CYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTK 581
C+NC GH + CPE R C+NC + GH S CP+ K
Sbjct: 244 CFNCKGEGHRSAECPEPPRG-----CFNCGEQGHRSNECPNPAK 282
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 48.4 bits (110), Expect = 7e-06
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = +3
Query: 450 CYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPD---GTKTCYVCGKPGHISR 620
C+NC + GHI++ C + + C NC + GH + +C C CG GH +
Sbjct: 572 CHNCGEEGHISKECDK--PKVPRFPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAV 629
Query: 621 XCDXARNXPQPPC 659
CD + P+ PC
Sbjct: 630 DCDQPK-VPRGPC 641
Score = 46.4 bits (105), Expect = 3e-05
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Frame = +3
Query: 450 CYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTKT----CYVCGKPGHIS 617
C NC + GH A +C + C NC GH + +C D K C CG+ GH +
Sbjct: 595 CRNCEQLGHFASDCDQP--RVPRGPCRNCGIEGHFAVDC-DQPKVPRGPCRNCGQEGHFA 651
Query: 618 RXC--DXARNXPQPPC 659
+ C + R P PC
Sbjct: 652 KDCQNERVRMEPTEPC 667
Score = 46.0 bits (104), Expect = 4e-05
Identities = 26/91 (28%), Positives = 33/91 (36%), Gaps = 4/91 (4%)
Frame = +3
Query: 321 CFKCNRTGHFARDCKE---EG*PLLQMXXXXXXXXXXXXXXXTKPSCYNCNKTGHIARNC 491
C C + GHFA DC + P + C NC + GH A++C
Sbjct: 595 CRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDC 654
Query: 492 P-EGGRESATXTCYNCNKSGHISRNCPDGTK 581
E R T C C + GH CP K
Sbjct: 655 QNERVRMEPTEPCRRCAEEGHWGYECPTRPK 685
Score = 45.2 bits (102), Expect = 7e-05
Identities = 27/113 (23%), Positives = 41/113 (36%), Gaps = 9/113 (7%)
Frame = +3
Query: 315 RXCFKCNRTGHFARDC---KEEG*PLLQMXXXXXXXXXXXXXXXTKPSCYNCNKTGHIAR 485
R C C GH +++C K P + C NC GH A
Sbjct: 570 RGCHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAV 629
Query: 486 NCPEGGRESATXTCYNCNKSGHISRNCP------DGTKTCYVCGKPGHISRXC 626
+C + + C NC + GH +++C + T+ C C + GH C
Sbjct: 630 DCDQ--PKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYEC 680
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 48.4 bits (110), Expect = 7e-06
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = +3
Query: 450 CYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPD---GTKTCYVCGKPGHISR 620
C+NC + GHI++ C + + C NC + GH + +C C CG GH +
Sbjct: 572 CHNCGEEGHISKECDK--PKVPRFPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAV 629
Query: 621 XCDXARNXPQPPC 659
CD + P+ PC
Sbjct: 630 DCDQPK-VPRGPC 641
Score = 46.4 bits (105), Expect = 3e-05
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Frame = +3
Query: 450 CYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTKT----CYVCGKPGHIS 617
C NC + GH A +C + C NC GH + +C D K C CG+ GH +
Sbjct: 595 CRNCEQLGHFASDCDQP--RVPRGPCRNCGIEGHFAVDC-DQPKVPRGPCRNCGQEGHFA 651
Query: 618 RXC--DXARNXPQPPC 659
+ C + R P PC
Sbjct: 652 KDCQNERVRMEPTEPC 667
Score = 46.0 bits (104), Expect = 4e-05
Identities = 26/91 (28%), Positives = 33/91 (36%), Gaps = 4/91 (4%)
Frame = +3
Query: 321 CFKCNRTGHFARDCKE---EG*PLLQMXXXXXXXXXXXXXXXTKPSCYNCNKTGHIARNC 491
C C + GHFA DC + P + C NC + GH A++C
Sbjct: 595 CRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDC 654
Query: 492 P-EGGRESATXTCYNCNKSGHISRNCPDGTK 581
E R T C C + GH CP K
Sbjct: 655 QNERVRMEPTEPCRRCAEEGHWGYECPTRPK 685
Score = 45.2 bits (102), Expect = 7e-05
Identities = 27/113 (23%), Positives = 41/113 (36%), Gaps = 9/113 (7%)
Frame = +3
Query: 315 RXCFKCNRTGHFARDC---KEEG*PLLQMXXXXXXXXXXXXXXXTKPSCYNCNKTGHIAR 485
R C C GH +++C K P + C NC GH A
Sbjct: 570 RGCHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAV 629
Query: 486 NCPEGGRESATXTCYNCNKSGHISRNCP------DGTKTCYVCGKPGHISRXC 626
+C + + C NC + GH +++C + T+ C C + GH C
Sbjct: 630 DCDQ--PKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYEC 680
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 43.2 bits (97), Expect = 3e-04
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +3
Query: 492 PEGGRESATXTCYNCNK-SGHISRNCPD---GTKTCYVCGKPGHISRXCDXARNXPQP 653
P G +++ + C+ C K + H +++CP+ K CY CG H+S C R +P
Sbjct: 102 PLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRKHRP 159
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 43.2 bits (97), Expect = 3e-04
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +3
Query: 492 PEGGRESATXTCYNCNK-SGHISRNCPD---GTKTCYVCGKPGHISRXCDXARNXPQP 653
P G +++ + C+ C K + H +++CP+ K CY CG H+S C R +P
Sbjct: 133 PLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRKHRP 190
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 43.2 bits (97), Expect = 3e-04
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +3
Query: 492 PEGGRESATXTCYNCNK-SGHISRNCPD---GTKTCYVCGKPGHISRXCDXARNXPQP 653
P G +++ + C+ C K + H +++CP+ K CY CG H+S C R +P
Sbjct: 133 PLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRKHRP 190
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 43.2 bits (97), Expect = 3e-04
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +3
Query: 492 PEGGRESATXTCYNCNK-SGHISRNCPD---GTKTCYVCGKPGHISRXCDXARNXPQP 653
P G +++ + C+ C K + H +++CP+ K CY CG H+S C R +P
Sbjct: 133 PLGRKKAVSLRCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRKHRP 190
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 41.9 bits (94), Expect = 6e-04
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 522 TCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRXC-DXARNXPQPP 656
TC+NC K GH + C + C CG P H + C ++N Q P
Sbjct: 203 TCFNCKKYGHRATECSAPQRECANCGDPNHRANECASWSKNGVQEP 248
Score = 35.1 bits (77), Expect = 0.073
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +3
Query: 447 SCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTK 581
+C+NC K GH A C RE C NC H + C +K
Sbjct: 203 TCFNCKKYGHRATECSAPQRE-----CANCGDPNHRANECASWSK 242
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 41.9 bits (94), Expect = 6e-04
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 522 TCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRXC-DXARNXPQPP 656
TC+NC K GH + C + C CG P H + C ++N Q P
Sbjct: 203 TCFNCKKYGHRATECSAPQRECANCGDPNHRANECASWSKNGVQEP 248
Score = 35.1 bits (77), Expect = 0.073
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +3
Query: 447 SCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCPDGTK 581
+C+NC K GH A C RE C NC H + C +K
Sbjct: 203 TCFNCKKYGHRATECSAPQRE-----CANCGDPNHRANECASWSK 242
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 38.3 bits (85), Expect = 0.008
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 450 CYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNC 566
C NC H + CP+ + C NC GHIS++C
Sbjct: 430 CSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDC 468
Score = 33.9 bits (74), Expect = 0.17
Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Frame = +3
Query: 525 CYNCNKSGHISRNCPDGTKT-----CYVCGKPGHISRXC 626
C NC H S CPD C CG GHIS+ C
Sbjct: 430 CSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDC 468
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 38.3 bits (85), Expect = 0.008
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 450 CYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNC 566
C NC H + CP+ + C NC GHIS++C
Sbjct: 430 CSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDC 468
Score = 33.9 bits (74), Expect = 0.17
Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Frame = +3
Query: 525 CYNCNKSGHISRNCPDGTKT-----CYVCGKPGHISRXC 626
C NC H S CPD C CG GHIS+ C
Sbjct: 430 CSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDC 468
>AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical
protein K08D12.3b protein.
Length = 42
Score = 36.7 bits (81), Expect = 0.024
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 525 CYNCNKSGHISRNCPDG 575
CY C + GHISRNCP+G
Sbjct: 6 CYKCQQPGHISRNCPNG 22
Score = 35.5 bits (78), Expect = 0.056
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 447 SCYNCNKTGHIARNCPEG 500
+CY C + GHI+RNCP G
Sbjct: 5 NCYKCQQPGHISRNCPNG 22
Score = 30.7 bits (66), Expect = 1.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 579 KTCYVCGKPGHISRXC 626
+ CY C +PGHISR C
Sbjct: 4 RNCYKCQQPGHISRNC 19
Score = 28.3 bits (60), Expect = 8.4
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 315 RXCFKCNRTGHFARDC 362
R C+KC + GH +R+C
Sbjct: 4 RNCYKCQQPGHISRNC 19
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 36.3 bits (80), Expect = 0.032
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +3
Query: 447 SCYNCNKTGHIARNCPE-GGRESATXTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRX 623
+C+NC++ GH A CP G+ ++ I TCY CG+ GH +
Sbjct: 205 TCHNCHERGHKATTCPHLPGQTRQNQDHHHRVDLSLIPDKKNLSDVTCYKCGEKGHYANR 264
Query: 624 C 626
C
Sbjct: 265 C 265
Score = 30.7 bits (66), Expect = 1.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 208 MSSSVCYKCNRTGHFAREMHAG 273
+S CYKC GH+A H G
Sbjct: 247 LSDVTCYKCGEKGHYANRCHKG 268
Score = 28.7 bits (61), Expect = 6.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 510 SATXTCYNCNKSGHISRNCP 569
S TC+NC++ GH + CP
Sbjct: 201 SQAITCHNCHERGHKATTCP 220
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 36.3 bits (80), Expect = 0.032
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 450 CYNCNKTGHIARNCPEGGRESATXTCYNCNKSG-HISRNCPDGTKTCYVCGKPGHISRXC 626
C +C + G C + +++A+ C C +SG H++ + C+ C + GHI+ C
Sbjct: 631 CSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNRACFRCNEMGHIAWNC 690
Score = 32.3 bits (70), Expect = 0.52
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 447 SCYNCNKTGHIARNCPE 497
+C+ CN+ GHIA NCP+
Sbjct: 676 ACFRCNEMGHIAWNCPK 692
Score = 31.5 bits (68), Expect = 0.90
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 450 CYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCP 569
C C ++G +C + C+ CN+ GHI+ NCP
Sbjct: 656 CDECQQSGWHMASC----FKLKNRACFRCNEMGHIAWNCP 691
Score = 28.7 bits (61), Expect = 6.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 315 RXCFKCNRTGHFARDCKEE 371
R CF+CN GH A +C ++
Sbjct: 675 RACFRCNEMGHIAWNCPKK 693
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 36.3 bits (80), Expect = 0.032
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 450 CYNCNKTGHIARNCPEGGRESATXTCYNCNKSG-HISRNCPDGTKTCYVCGKPGHISRXC 626
C +C + G C + +++A+ C C +SG H++ + C+ C + GHI+ C
Sbjct: 534 CSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNRACFRCNEMGHIAWNC 593
Score = 32.3 bits (70), Expect = 0.52
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 447 SCYNCNKTGHIARNCPE 497
+C+ CN+ GHIA NCP+
Sbjct: 579 ACFRCNEMGHIAWNCPK 595
Score = 31.5 bits (68), Expect = 0.90
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 450 CYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCP 569
C C ++G +C + C+ CN+ GHI+ NCP
Sbjct: 559 CDECQQSGWHMASC----FKLKNRACFRCNEMGHIAWNCP 594
Score = 28.7 bits (61), Expect = 6.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 315 RXCFKCNRTGHFARDCKEE 371
R CF+CN GH A +C ++
Sbjct: 578 RACFRCNEMGHIAWNCPKK 596
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 36.3 bits (80), Expect = 0.032
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 450 CYNCNKTGHIARNCPEGGRESATXTCYNCNKSG-HISRNCPDGTKTCYVCGKPGHISRXC 626
C +C + G C + +++A+ C C +SG H++ + C+ C + GHI+ C
Sbjct: 545 CSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNRACFRCNEMGHIAWNC 604
Score = 32.3 bits (70), Expect = 0.52
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 447 SCYNCNKTGHIARNCPE 497
+C+ CN+ GHIA NCP+
Sbjct: 590 ACFRCNEMGHIAWNCPK 606
Score = 31.5 bits (68), Expect = 0.90
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +3
Query: 450 CYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRNCP 569
C C ++G +C + C+ CN+ GHI+ NCP
Sbjct: 570 CDECQQSGWHMASC----FKLKNRACFRCNEMGHIAWNCP 605
Score = 28.7 bits (61), Expect = 6.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 315 RXCFKCNRTGHFARDCKEE 371
R CF+CN GH A +C ++
Sbjct: 589 RACFRCNEMGHIAWNCPKK 607
>L12018-4|AAK68342.1| 456|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 10, isoform a
protein.
Length = 456
Score = 32.7 bits (71), Expect = 0.39
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +3
Query: 441 KPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRN 563
K SC CN TG +++ +GG T TC C SGH ++N
Sbjct: 205 KTSCPYCNGTGAVSQRL-QGGFFYQT-TCNRCRGSGHYNKN 243
>L12018-3|AAK68343.1| 446|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 10, isoform b
protein.
Length = 446
Score = 32.7 bits (71), Expect = 0.39
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +3
Query: 441 KPSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHISRN 563
K SC CN TG +++ +GG T TC C SGH ++N
Sbjct: 205 KTSCPYCNGTGAVSQRL-QGGFFYQT-TCNRCRGSGHYNKN 243
>Z79603-8|CAH04750.1| 137|Caenorhabditis elegans Hypothetical
protein M163.8 protein.
Length = 137
Score = 32.3 bits (70), Expect = 0.52
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -3
Query: 588 STFWCRRDSCGRCGRTCCSYSRXASQTPAPPRDSSVRCGPSCCSCNTTASSGLC 427
S+F+ C +C S +S T + SS CG S +C + AS+G C
Sbjct: 39 SSFYSDAQKTEYCPASCRLCSGASSTTSSSASSSSSTCGDSNSNCASWASNGFC 92
>AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical
protein K02F6.1 protein.
Length = 783
Score = 32.3 bits (70), Expect = 0.52
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 444 PSCYNCNKTGHIARNCPEGGRES 512
P CY C GH++++CP+ S
Sbjct: 311 PYCYKCKVVGHVSKDCPQSSTNS 333
Score = 29.1 bits (62), Expect = 4.8
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 525 CYNCNKSGHISRNCPDGT 578
CY C GH+S++CP +
Sbjct: 313 CYKCKVVGHVSKDCPQSS 330
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 31.5 bits (68), Expect = 0.90
Identities = 16/50 (32%), Positives = 17/50 (34%)
Frame = -3
Query: 576 CRRDSCGRCGRTCCSYSRXASQTPAPPRDSSVRCGPSCCSCNTTASSGLC 427
C R C C R CC+ R T C P CC C G C
Sbjct: 88 CCRPRCCCCCRRCCTCCRTCCCTRC-----CTCCRPCCCGCGCGCGCGCC 132
>Z81540-2|CAB04403.1| 190|Caenorhabditis elegans Hypothetical
protein F46B3.2 protein.
Length = 190
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = -3
Query: 564 SCGRCGRTCCSYSRXASQTPAPPRDSSVRCGPSCCSCNTTASSGLCAHFARYVP 403
SCG C + + S T P +++ C S C+ A G C + A Y P
Sbjct: 124 SCGLCTGNVTTPATTTSTTTPVPLTTTIECKDSLLRCSEMAKKGFCTNPA-YKP 176
>Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical
protein M163.11 protein.
Length = 224
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -3
Query: 588 STFWCRRDSCGRCGRTC--CSYSRXASQTPAPPRDSSVRCGPSCCSCNTTASSGLCAH 421
S+F+ C TC CS S +S + + SS C S SC++ A++G C +
Sbjct: 149 SSFYTTAIKTQYCAATCSLCSSSSDSSSSSSTASTSS-SCTDSASSCSSWAANGFCTN 205
>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical protein
F54F3.1 protein.
Length = 1584
Score = 30.3 bits (65), Expect = 2.1
Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 8/86 (9%)
Frame = +3
Query: 444 PSCYNCNKTGHIARNCPEGGRESATXTCYNCNKSGHI---SRNCPDGTKTC-----YVCG 599
P C NC+ + A+N G + YN N GH+ +C D C V G
Sbjct: 1201 PRCTNCSIHAYCAQNPTSGAYQCKCNAGYNGN--GHLCVSMSSCLDDRSLCDENADCVPG 1258
Query: 600 KPGHISRXCDXARNXPQPPCXPLQST 677
+ GH C + C P ST
Sbjct: 1259 EAGHYVCNCHYGYHGDGRSCSPESST 1284
>Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical
protein C06A1.7 protein.
Length = 149
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = -3
Query: 576 CRRDSCGRCGRTCCSYSRXASQTPAPPRDSSVRCGPSCCSC 454
CR C C RTCC +R T P CG CC C
Sbjct: 79 CRPKCCCTCCRTCCC-TRCC--TCCRPCCCGCGCGCGCCGC 116
>Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical
protein C06A1.6 protein.
Length = 152
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = -3
Query: 576 CRRDSCGRCGRTCCSYSRXASQTPAPPRDSSVRCGPSCCSC 454
CR C C RTCC +R T P CG CC C
Sbjct: 82 CRPKCCCTCCRTCCC-TRCC--TCCRPCCCGCGCGCGCCGC 119
>Z75545-3|CAA99886.1| 922|Caenorhabditis elegans Hypothetical
protein K10D3.4 protein.
Length = 922
Score = 29.9 bits (64), Expect = 2.8
Identities = 25/76 (32%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Frame = +3
Query: 477 IARNCPEG------GRESATXTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRXCDXAR 638
++ CP G G S C N +G +S CPDG TCY P C A
Sbjct: 682 LSEACPPGTVVAKDGDGSRLVQCSNPGGNGRVSGGCPDG-YTCY--SSPLLDQNVCCGAS 738
Query: 639 NXPQPPCXPLQSTMYI 686
Q C P ST +I
Sbjct: 739 TELQSLC-PAASTPFI 753
>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
protein F54G2.2 protein.
Length = 1023
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Frame = +3
Query: 450 CYNCNKTGHIARNC---PEGG-RESATXTCYNCNKSGHISRNCP 569
C C + G +C P+ RE C+ C + GHIS CP
Sbjct: 581 CAECKQVGGHEPSCSLAPKTWKRERPPPQCFTCGEMGHISTYCP 624
Score = 28.7 bits (61), Expect = 6.4
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 444 PSCYNCNKTGHIARNCPE 497
P C+ C + GHI+ CP+
Sbjct: 608 PQCFTCGEMGHISTYCPK 625
>Z81540-1|CAB04402.1| 186|Caenorhabditis elegans Hypothetical
protein F46B3.1 protein.
Length = 186
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = -3
Query: 564 SCGRCGRTCCSYSRXASQTPAPPRDSSVRCGPSCCSCNTTASSGLC 427
SCG C + + S T P +++ C S C+ A G C
Sbjct: 120 SCGLCTGNVTTPATTTSTTTPIPLTTTIECKDSLLRCSEMAKQGFC 165
>Z81071-6|CAB03010.1| 464|Caenorhabditis elegans Hypothetical
protein F28F8.7 protein.
Length = 464
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 525 CYNCNKSGHISRNCPDGTKTCYVC 596
C NCNK+ PD TK C +C
Sbjct: 302 CQNCNKALKYYDPIPDDTKLCLIC 325
>Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical
protein C27B7.5 protein.
Length = 386
Score = 29.5 bits (63), Expect = 3.6
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 525 CYNCNKSGHISRNCP 569
C++C + GHISR CP
Sbjct: 170 CFHCQEHGHISRMCP 184
Score = 28.3 bits (60), Expect = 8.4
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 450 CYNCNKTGHIARNCPE 497
C++C + GHI+R CP+
Sbjct: 170 CFHCQEHGHISRMCPK 185
>AC084159-15|AAK39353.1| 418|Caenorhabditis elegans Hypothetical
protein Y73B3A.13 protein.
Length = 418
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 525 CYNCNKSGHISRNCPDGTKTCYVC 596
C NCNK+ PD TK C +C
Sbjct: 281 CQNCNKALKYYDPIPDDTKLCLIC 304
>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
protein R52.2 protein.
Length = 1019
Score = 29.1 bits (62), Expect = 4.8
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Frame = +3
Query: 438 TKPSCYNCNKTGHIARN--CP-----EGGRESATXT--CYNCNKSGHISRNCPDGTKTCY 590
T C C+ T H+ R+ CP E + A C+ C +SGH C +TC
Sbjct: 310 TLSPCIFCSSTSHVHRHEECPIFNTAEARIQKAREIGLCFGCLRSGHQRSKC-SRPRTCN 368
Query: 591 VCGKPGHISRXC-DXARNXPQPP 656
C K H + C RN + P
Sbjct: 369 HC-KGNHHTVFCQSHNRNATRNP 390
>Z81532-7|CAJ34990.1| 363|Caenorhabditis elegans Hypothetical
protein F36F2.3b protein.
Length = 363
Score = 28.3 bits (60), Expect = 8.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 501 GRESATXTCYNCNKSGHISRNCP 569
G T TC C++ GH +NCP
Sbjct: 150 GPPPPTYTCNRCSQPGHWYKNCP 172
>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
protein F36F2.3a protein.
Length = 1128
Score = 28.3 bits (60), Expect = 8.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 501 GRESATXTCYNCNKSGHISRNCP 569
G T TC C++ GH +NCP
Sbjct: 150 GPPPPTYTCNRCSQPGHWYKNCP 172
>Z54216-1|CAA90943.1| 308|Caenorhabditis elegans Hypothetical
protein T24H10.1 protein.
Length = 308
Score = 28.3 bits (60), Expect = 8.4
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -3
Query: 561 CGRCGRTCCSYSRXASQTPAPPRDSSVRC 475
CG+CG+ C+Y++ +++ P + V C
Sbjct: 270 CGKCGKKNCTYTQLQTRSSDEPMTTFVFC 298
>AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical
protein F49F1.8 protein.
Length = 615
Score = 28.3 bits (60), Expect = 8.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 441 KPSCYNCNKTGHIARNC 491
K C+ C GH+ARNC
Sbjct: 573 KGQCHYCKNVGHMARNC 589
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,884,407
Number of Sequences: 27780
Number of extensions: 275294
Number of successful extensions: 1209
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2433684176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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