Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_P19
         (939 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   0.13 
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    27   5.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   8.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/48 (29%), Positives = 14/48 (29%)
 Frame = +3

Query: 171 PPPXPGXXXXPRLKXQXPXPPPPXXKKXXXXGXKXKGXAXNGXXXPPP 314
           PPP P            P PPP              G A  G   PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 26.2 bits (55), Expect(2) = 0.13
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 716 GPPPPPPP 739
           GPPPPPPP
Sbjct: 760 GPPPPPPP 767



 Score = 26.2 bits (55), Expect(2) = 0.27
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 716 GPPPPPPP 739
           GPPPPPPP
Sbjct: 774 GPPPPPPP 781



 Score = 24.2 bits (50), Expect(2) = 0.13
 Identities = 10/17 (58%), Positives = 10/17 (58%), Gaps = 4/17 (23%)
 Frame = +2

Query: 719 PPPPPPP----XXPXPP 757
           PPPPPPP      P PP
Sbjct: 762 PPPPPPPGVAGAGPPPP 778



 Score = 23.0 bits (47), Expect(2) = 0.27
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 722 PPPPPPXXP 748
           PPPPPP  P
Sbjct: 775 PPPPPPPPP 783


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 716 GPPPPPPPXXPXPP 757
           GPP PPPP    PP
Sbjct: 225 GPPSPPPPVLHSPP 238


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 719 PPPPPPPXXPXPP 757
           PPPPPPP    PP
Sbjct: 9   PPPPPPPPGFEPP 21


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 719 PPPPPPPXXP 748
           PPPPPPP  P
Sbjct: 238 PPPPPPPTLP 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,330,036
Number of Sequences: 5004
Number of extensions: 12598
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)