Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_P16
         (962 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   0.66 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      25   0.66 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   0.88 

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 18/68 (26%), Positives = 25/68 (36%)
 Frame = +1

Query: 649 TPSXALLVXTPARLPGIP*SXHXSPFPQSGAAXPXPXPPVGXPPPPXXRPXXTQTXAVLP 828
           T    +++ +P+     P     SP+       P     V  PPPP             P
Sbjct: 694 TSPGGMVLPSPSTSVASPSVSVASPYMLQSPLTPHEAFDVKLPPPPHPHHQP-------P 746

Query: 829 RNPXGSNP 852
           RNP G+NP
Sbjct: 747 RNPVGTNP 754



 Score = 23.4 bits (48), Expect = 2.7
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +1

Query: 610 PTGL*TYQPXPPETPSXALLVXTPARLPGIP*SXHXSPFPQS 735
           P G   Y    PE    A    TP+  P  P +   SP+P +
Sbjct: 168 PAGQYPYPILSPEMSQVAASWHTPSMYPLSPGAGFRSPYPSA 209


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 18/68 (26%), Positives = 25/68 (36%)
 Frame = +1

Query: 649 TPSXALLVXTPARLPGIP*SXHXSPFPQSGAAXPXPXPPVGXPPPPXXRPXXTQTXAVLP 828
           T    +++ +P+     P     SP+       P     V  PPPP             P
Sbjct: 586 TSPGGMVLPSPSTSVASPSVSVASPYMLQSPLTPHEAFDVKLPPPPHPHHQP-------P 638

Query: 829 RNPXGSNP 852
           RNP G+NP
Sbjct: 639 RNPVGTNP 646



 Score = 23.4 bits (48), Expect = 2.7
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +1

Query: 610 PTGL*TYQPXPPETPSXALLVXTPARLPGIP*SXHXSPFPQS 735
           P G   Y    PE    A    TP+  P  P +   SP+P +
Sbjct: 60  PAGQYPYPILSPEMSQVAASWHTPSMYPLSPGAGFRSPYPSA 101


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 25.0 bits (52), Expect = 0.88
 Identities = 11/29 (37%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
 Frame = +1

Query: 718 SPFPQSGAAXPXPXP--PVGXPPPPXXRP 798
           +P P  G   P P P  PV   P P   P
Sbjct: 70  TPLPSDGTTSPEPDPEIPVAPEPAPLASP 98


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,101
Number of Sequences: 336
Number of extensions: 2507
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 27202879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)