Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_P16
(962 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 36 0.011
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.045
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.56
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 1.7
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 1.7
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 35.5 bits (78), Expect = 0.011
Identities = 24/84 (28%), Positives = 28/84 (33%), Gaps = 1/84 (1%)
Frame = +1
Query: 634 PXPPETPSXALLVXTPARLPGIP*-SXHXSPFPQSGAAXPXPXPPVGXPPPPXXRPXXTQ 810
P P+ + V P+ P +P S P P A P P P G PP P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238
Query: 811 TXAVLPRNPXGSNPRXXGPXKPXN 882
A P S PR P N
Sbjct: 1239 VPAPSSEAPSVSTPRSSVPSPHSN 1262
Score = 32.7 bits (71), Expect = 0.079
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +1
Query: 634 PXPPETPSXAL-LVXTPARLPGIP*SXHXSPFPQ-SGAAXPXPXPPVGXPPPP 786
P P PS + + P+ P +P P P+ S AA P P P V PP P
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVP 1115
Score = 31.1 bits (67), Expect = 0.24
Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 2/77 (2%)
Frame = +1
Query: 652 PSXALLVXTPARLPGIP-*SXHXSPFPQSGAAXPXPXPPVGXPPPPXXRPXXTQTXAVLP 828
PS A V P+ +P +P S P P+ A P P G PP P +P +P
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVP--KPSVAAPPVPVP 1136
Query: 829 RN-PXGSNPRXXGPXKP 876
P P P P
Sbjct: 1137 SGAPPVPKPSVAAPPVP 1153
Score = 30.7 bits (66), Expect = 0.32
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Frame = +1
Query: 634 PXPPETPSXALLVXTPARLPGIP*-SXHXSPFPQSGAAXPXPXPPVGXPPPP 786
P P+ A V P+ P +P S P P A P P P V PP P
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVP 1172
Score = 30.3 bits (65), Expect = 0.42
Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Frame = +1
Query: 610 PTGL*TYQPXPPETPSXALLVXTP-----ARLPGIP*SXHXSPFPQSGAAXPXPXPPVGX 774
P + T P P++ S A P + +P IP P P P P P V
Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAA 1101
Query: 775 PPPP 786
PP P
Sbjct: 1102 PPVP 1105
Score = 30.3 bits (65), Expect = 0.42
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +1
Query: 640 PPETPSXALLVXTPA-RLPGIP*SXHXSPFPQ-SGAAXPXPXPPVGXPPPP 786
P PS A V P+ P +P P P+ S AA P P P G PP P
Sbjct: 1132 PVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVP 1182
Score = 29.1 bits (62), Expect = 0.98
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +1
Query: 634 PXPPETPSXALLVXTPARLPGIP*SXHXSPFPQSGAAXPXPXPPVGXP 777
P P + A + P+ P +P P P+S + P PPV P
Sbjct: 1022 PPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAP 1069
Score = 27.9 bits (59), Expect = 2.3
Identities = 22/74 (29%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Frame = +1
Query: 634 PXPPETPSXALLVXTP-ARLPGIP*SXHXSPFPQSGAAXPXPXPPVGXPPPPXXRPXXTQ 810
P P+ S A V P A P IP P P + P P G P P P +
Sbjct: 1012 PPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSS 1071
Query: 811 TXAVLPRNPXGSNP 852
+P P G+ P
Sbjct: 1072 EIPSIPA-PSGAPP 1084
Score = 27.1 bits (57), Expect = 3.9
Identities = 18/51 (35%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Frame = +1
Query: 640 PPETPSXALLVXTPA-RLPGIP*-SXHXSPFPQSGAAXPXPXPPVGXPPPP 786
P PS V P+ P +P S P P A P P P V PP P
Sbjct: 1084 PVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVP 1134
Score = 26.6 bits (56), Expect = 5.2
Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Frame = +1
Query: 634 PXPPETPSXALLVXTPAR-LPGIP*SXHXSPFPQSGAAXPXPXPPVGXPPPP 786
P P S V PA +P +P P P+ P PP PP P
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
Score = 26.2 bits (55), Expect = 6.9
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Frame = +1
Query: 634 PXPPETPSXALLVXTPA-RLPGIP*SXHXSPFPQSGAAXPXPXPPVGXPPPP 786
P P+ A V P+ +P +P P P+ A P P G PP P
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVP 1143
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.5 bits (73), Expect = 0.045
Identities = 28/94 (29%), Positives = 34/94 (36%), Gaps = 2/94 (2%)
Frame = +1
Query: 562 PDXHHKNRXSTXRWRNPTGL*TYQPX--PPETPSXALLVXTPARLPGIP*SXHXSPFPQS 735
P + +R ST P L P PP P +L + PA P P + P P
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP-SLPMGAPAAPPLPPSAPIAPPLPAG 462
Query: 736 GAAXPXPXPPVGXPPPPXXRPXXTQTXAVLPRNP 837
A P P PP PPP P A + P
Sbjct: 463 MPAAP-PLPPAAPAPPPAPAPAPAAPVASIAELP 495
Score = 31.5 bits (68), Expect = 0.18
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Frame = +1
Query: 721 PFPQSGAAXPXPXPPVG----XPPPPXXRPXXTQTXAVLPRNPXGSNPRXXGPXKP 876
P P+S AA P PP G PPPP P + L + SNP P P
Sbjct: 341 PPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Score = 30.7 bits (66), Expect = 0.32
Identities = 21/73 (28%), Positives = 25/73 (34%), Gaps = 2/73 (2%)
Frame = +1
Query: 634 PXPPETPSXALLVXTPARLPGIP*SXHXSPF--PQSGAAXPXPXPPVGXPPPPXXRPXXT 807
P PP P A P+ P +P +P P + A P P PP P P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
Query: 808 QTXAVLPRNPXGS 846
A P P S
Sbjct: 478 PAPAPAPAAPVAS 490
Score = 26.2 bits (55), Expect = 6.9
Identities = 24/95 (25%), Positives = 29/95 (30%), Gaps = 5/95 (5%)
Frame = +1
Query: 691 PGIP*SXHXSPFPQSGAAXPXPXPPVG---XPPPPXXRPXXTQTXAVLPRNPXGSNPRXX 861
P IP S P A P P PP PP P ++ P S P
Sbjct: 234 PSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLP 293
Query: 862 GPXKPXN--XXLXDSQXPPRHPTKDARPRGXXXXG 960
P + + + PP P R RG G
Sbjct: 294 PPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIG 328
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.56
Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Frame = +1
Query: 727 PQSGAAXPXPXPPVGXPPPPXXRPXXT-QTXAVLPRNPXGSNPRXXGP 867
PQ A P P PP+ PPPP P A P P S P P
Sbjct: 1700 PQMSAPTPPP-PPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.3 bits (60), Expect = 1.7
Identities = 24/63 (38%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +1
Query: 742 AXPXPXPPVGXPPPPXXRPXXTQTXAV-LP-RNPXGSNPRXXGPXKPXNXXLXDSQXPPR 915
A P P PP PPPP P T T + +P RN + P P SQ PPR
Sbjct: 232 ADPLPAPP--PPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPAT----PSQ-PPR 284
Query: 916 HPT 924
PT
Sbjct: 285 PPT 287
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.3 bits (60), Expect = 1.7
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Frame = +1
Query: 643 PETPSXALLVXTPARLP-GIP*-----SXHXSPFPQSGAAXPXPXPPVGXPPPPXXRPXX 804
P P A++V TPA P +P P P G A P PP PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP--PPPPPAVSAGG 789
Query: 805 TQTXAVLPR 831
++ A P+
Sbjct: 790 SRYYAPAPQ 798
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,580,637
Number of Sequences: 5004
Number of extensions: 36917
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -